Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060163.seq
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   1.9  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   2.5  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   7.7  
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch...    25   7.7  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   7.7  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 318 LITKEGVIQLIMKSKLPYAV 377
           L+ K+GV+ L+ K KLP++V
Sbjct: 542 LLVKDGVVHLVDKVKLPFSV 561


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 257 GYGIDPDSLYVVLYFLS 207
           GY +DPD +Y +L FLS
Sbjct: 808 GYKLDPDDVYNILSFLS 824


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 85  EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQ 189
           E +FTL+ ++E G  + +    DIA +L++++ +Q
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQ 420


>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 213

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 270 NVVKQXDPLYLQPHTVLITKEGVIQLIMKSKL 365
           ++VK+  P  L PH      EG+I+ I   KL
Sbjct: 23  SLVKKVGPCTLTPHPEHAPYEGIIRAITSQKL 54


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 369 YAVELQAWLLEEVIPQCCARASTRRPSRWTQIMV*LKS*IKSWR 500
           YA  LQ    +E + +   R   R PSR  +I V + S I+ WR
Sbjct: 78  YAFRLQI-ASKEFLNELVRRFPERPPSRLNKIQVMILSLIEEWR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,366
Number of Sequences: 5004
Number of extensions: 44250
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)