Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060163.seq
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425...    30   1.5  
07_01_0846 + 6873655-6873783,6875175-6875368,6875923-6876007,687...    27   7.8  
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    27   7.8  
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13...    27   7.8  

>04_01_0316 +
           4251465-4251590,4251664-4251719,4252973-4253087,
           4253174-4253417,4254189-4254325,4255006-4255065,
           4255336-4255460,4256021-4256048,4256267-4256336,
           4256513-4256565,4256966-4257025,4257498-4257544,
           4257617-4257741,4258572-4258686,4258778-4258826,
           4260415-4260471,4261126-4261209,4261363-4261442,
           4262005-4262094,4262252-4262375
          Length = 614

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 58  VKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASS 165
           V+ G FK  ED   +   L++ N++ +FVA ++ +S
Sbjct: 332 VRCGNFKISEDYQAVNVTLKKDNMRTEFVAAEVDNS 367


>07_01_0846 +
           6873655-6873783,6875175-6875368,6875923-6876007,
           6876041-6876241,6876546-6876644,6876938-6876976
          Length = 248

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -1

Query: 305 LQVQWVTLLDHVVWSRGYGIDPDSLYVVLYFLSTLTITACLQFTYFKLLAMSLATN 138
           L V W  L  H +W+    I P+  Y  L+ LS L +   +Q   F +  + ++++
Sbjct: 95  LDVAWFILFSHAIWN----ITPEEKYGQLFVLS-LKLALWMQIIGFSMYRLGVSSS 145


>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
            30288447-30288641,30288743-30289363,30289688-30290257,
            30290332-30293638,30293764-30293863,30293978-30295014,
            30295256-30295604,30296299-30296374,30296456-30297022,
            30297094-30297238,30298281-30298405,30298491-30298582,
            30298646-30298828,30298946-30299058,30299499-30299649,
            30299720-30299882
          Length = 2701

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 273  RCLEPGLWYR-PRLAVRRFVF 214
            RC +P LW R P LA RR V+
Sbjct: 1863 RCTQPSLWAREPLLAFRRMVY 1883


>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
            132883-132996,133065-133193,133293-133469,133555-133746,
            134844-134981,135327-135559,135900-136003,136633-136727,
            136817-137053,137801-137922,138252-138354,138750-138826,
            138909-139017,139107-139253,139953-140000,140292-140492,
            140589-140738,140917-141002,141088-141193,141278-141373,
            141759-141911,142647-142819,142923-142986,144056-144193,
            144548-144595,144690-144836,144907-144968,146540-146645,
            147357-147461,147548-147679,147765-147974,148070-148171,
            148261-148398
          Length = 1729

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 106  YVLEQGNLQVKF----VAKDIASSLKYVNCKQAVIV 201
            Y LE  N  +K     +A+ IA +L Y NCK+ + V
Sbjct: 1174 YALESDNNTIKSSVHSIARTIAGNLAYANCKEPLCV 1209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,457
Number of Sequences: 37544
Number of extensions: 314873
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)