Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060163.seq
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.040
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  

>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = -2

Query: 328 LVMSTVCGCRYSGSXCLTTLSGAGVMV*TPTRCTSFC------IFCQH*LSQLVYNLHIL 167
           +VM TVC CRY  S C+ +L    V V   T C S C      + C    S+ V+++ + 
Sbjct: 246 VVMCTVCACRYVHSVCV-SLRSQCVRVIMYTVCVSLCAQCMRVVMCTVCASRYVHSVCVS 304

Query: 166 NCWRCL 149
            C +C+
Sbjct: 305 LCTQCM 310



 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 328 LVMSTVCGCRYSGSXCLT 275
           +VM TVC CRY  S C++
Sbjct: 312 VVMCTVCACRYIHSVCVS 329


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 64  IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 225
           I +F+FG        ++   + ++KF AK+IA + K++   QAV ++  K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 76   KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 237
            K GED F +  +L++G   V  V  D+ +S     CK+ ++      Y+  Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,741,253
Number of Sequences: 59808
Number of extensions: 359706
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)