Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060163.seq
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical p...    27   9.3  
U00047-5|AAA50691.1|  399|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 263 SRGYGIDPDSLYVVLYFLSTLTITAC--LQFTYF-KLLAMSLATNLTCRF 123
           SR +  +PDS+    Y+L  +T   C  +Q   F +LLA S   NLT  F
Sbjct: 241 SRVFSFNPDSVRHFNYWLELITNFVCELIQMLSFAQLLAFSPGLNLTSIF 290


>Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 263 SRGYGIDPDSLYVVLYFLSTLTITAC--LQFTYF-KLLAMSLATNLTCRF 123
           SR +  +PDS+    Y+L  +T   C  +Q   F +LLA S   NLT  F
Sbjct: 241 SRVFSFNPDSVRHFNYWLELITNFVCELIQMLSFAQLLAFSPGLNLTSIF 290


>U00047-5|AAA50691.1|  399|Caenorhabditis elegans Hypothetical
           protein ZK418.7 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +1

Query: 49  MAQVKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTT 228
           M +VKI  F F    F + ++   G +  + V       L ++NC    I   D+KY   
Sbjct: 1   MVEVKIYLFFFFRFHFAVHFLFGDGRMSGQSVP------LIFLNCSSIFIFGKDEKYAEC 54

Query: 229 YSESGSIP 252
             E+G+ P
Sbjct: 55  PIENGTDP 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,885,878
Number of Sequences: 27780
Number of extensions: 260038
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)