Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060163.seq
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   0.92 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.7  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   6.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.6  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -1

Query: 509 C*QTPTFYLTLQSHHNLCPS*RPARTCPCTALRNHLLQQPRLQFHSVRELALHN*LDNTL 330
           C QT   Y   Q+H  LCP+  P  T        HL      +  S R  +  N  ++ +
Sbjct: 365 CSQTSVHYSNGQTHSQLCPT--PRST--------HLKVSGINRVGSTRRPSRRNSCESQM 414

Query: 329 LGDEHCVR 306
           +GDE  +R
Sbjct: 415 MGDEMSLR 422


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 309 AAAGTVGHXA*PRCLEPGLWYRPRLAVRRFVFFVNINYHSLFTIYIF*TAGDVFSHKFDL 130
           A+AG  G       ++P  +  P  AVR F   ++  Y ++  I      GDV   K  L
Sbjct: 595 ASAGGAGGGGARSYVDPHTYEDPNQAVREFAREIDAGYITIEAIIGGGEFGDVCRGKLKL 654


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 303 QPHTVLITKEGVIQL 347
           +PHT L+T++ +++L
Sbjct: 127 RPHTYLVTRQKLLEL 141


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 303 QPHTVLITKEGVIQL 347
           +PHT L+T++ +++L
Sbjct: 126 RPHTSLVTRQKLLEL 140


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 303 QPHTVLITKEGVIQL 347
           +PHT L+T++ +++L
Sbjct: 248 RPHTSLVTRQKLLEL 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,216
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)