Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060163.seq
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    31   0.40 
At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low s...    29   2.1  
At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low s...    29   2.1  
At4g01640.1 68417.m00213 hypothetical protein                          28   3.7  
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con...    28   3.7  
At1g20570.1 68414.m02565 tubulin family protein                        28   5.0  
At5g22720.1 68418.m02654 F-box family protein contains F-box dom...    27   8.7  
At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger) fa...    27   8.7  

>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
            senescence-responsive receptor-like serine/threonine
            kinase, putative (SIRK) similar to light repressible
            receptor protein kinase [Arabidopsis thaliana]
            gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
            Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +3

Query: 219  QNDVQRVGVY---TITPAPDNVVKQXDPLYLQPHTVLITKEGVIQLIMKSKLPYAVEL-Q 386
            ++DV  +GV     IT  P     + + +++  H   I   G I+ I+  +L    ++  
Sbjct: 754  KSDVYSLGVVLLEVITGQPAIASSKTEKVHISDHVRSILANGDIRGIVDQRLRERYDVGS 813

Query: 387  AWLLEEVIPQCCARASTRRPSRWTQIMV*LK 479
            AW + E+   C    S +RP+  +Q+++ LK
Sbjct: 814  AWKMSEIALACTEHTSAQRPT-MSQVVMELK 843


>At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low
           similarity to SP|Q92989 Pre-mRNA cleavage complex II
           protein Clp1 {Homo sapiens}
          Length = 368

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +3

Query: 225 DVQRVGVYTITPAPDNVVKQXDPL---YLQPHTVLI 323
           D +R  +Y ITP P+N+V++ D L   Y+Q  T L+
Sbjct: 315 DTERGILYVITPVPENLVEKVDLLLQGYIQLPTCLL 350


>At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low
           similarity to SP|Q92989 Pre-mRNA cleavage complex II
           protein Clp1 {Homo sapiens}
          Length = 368

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +3

Query: 225 DVQRVGVYTITPAPDNVVKQXDPL---YLQPHTVLI 323
           D +R  +Y ITP P+N+V++ D L   Y+Q  T L+
Sbjct: 315 DTERGILYVITPVPENLVEKVDLLLQGYIQLPTCLL 350


>At4g01640.1 68417.m00213 hypothetical protein 
          Length = 300

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -1

Query: 377 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSRGYGID 243
           +S REL + N LD+ L   E     QV W    DH  W   Y ID
Sbjct: 185 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 228


>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
           contains Pfam PF00646: F-box domain; contains weak hit
           to TIGRFAM TIGR01640 : F-box protein interaction domain;
           weakly similar to  self-incompatibility (S-) locus F-box
           (GI:29420811) [Prunus mume]
          Length = 391

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -1

Query: 377 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSRGYGID 243
           +S REL + N LD+ L   E     QV W    DH  W   Y ID
Sbjct: 276 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 319


>At1g20570.1 68414.m02565 tubulin family protein
          Length = 976

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 267 DNVVKQXDPLYLQPHTVLITKEG---VIQLIMKSKLPYAVELQAWLLE 401
           D + K+ D + L     L+  EG   ++Q+   S LPY   L +WL E
Sbjct: 200 DYLYKRLDEVCLVQGGELVAVEGFHMLLQIFAGSLLPYVESLDSWLFE 247


>At5g22720.1 68418.m02654 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 64  IGEFKFGEDTFT-LRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDK-KY 219
           + + K     F  LRY   +  L++ FV + + SSL++V  K     N+++ KY
Sbjct: 308 VSDMKISSQAFAGLRYWTPKKELRLSFVPRCLLSSLEFVEIKGCSRSNMERVKY 361


>At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 257

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 324 TKEGVIQLIMKSKLPYAVELQ-AWLLEEVIPQCCARASTRRPSRWTQIMV*LKS*IKSWR 500
           T +GV +   K + P+ ++   +W       +   + +    + W  +++ +++ +++WR
Sbjct: 171 TDDGVRRCCSKCRKPFCIDCNVSWHSNLSCKEYKMKGNKATTTVWLYVLLCMRNPMEAWR 230

Query: 501 LLAKSGRGQRKNYTF 545
           LL+ S  G      F
Sbjct: 231 LLSSSPIGDETGGRF 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,125,042
Number of Sequences: 28952
Number of extensions: 238457
Number of successful extensions: 522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)