Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060162.seq
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   3.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   3.2  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    25   7.4  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   9.7  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 368 FAAPTTRGYCXFWIFLPCP 312
           F  P  +  C  W+FL CP
Sbjct: 493 FIIPIAKNVCYLWVFLYCP 511


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 587  SKMSASLILTQSCMYADKLTFSIQLACLLAPR 492
            S ++   IL Q  M+ DK+  +  LACL+A R
Sbjct: 1057 SAVTLESILLQCVMFGDKIYGAYCLACLMAQR 1088


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +2

Query: 353 LSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYKHLNAALINMRAVWKTL 532
           L V Q+ + + N         LL+ WF  PIK  +      +  +L    ++ R  W  +
Sbjct: 5   LVVDQENSEEFNTSSFEGPEKLLELWFSAPIKTNLS---AGEKANLGLKAVS-RNDWDDM 60

Query: 533 ICPRTCKIVS 562
           +    CK++S
Sbjct: 61  LAQAQCKVLS 70


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 359 PTTRGYCXFWIFLPCP 312
           P ++  C  W+FL CP
Sbjct: 495 PISKNICYLWLFLYCP 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,496
Number of Sequences: 5004
Number of extensions: 47282
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)