Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060162.seq
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320     29   3.3  
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436...    29   4.4  

>01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320
          Length = 463

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 200 N*NNFPIQFVAKHVNKIGASVTFARYALPKRVIXXIEXIDXXXGXFDG 57
           N ++  +Q +   VN  G S+T+ARYAL   ++  +  I+     F G
Sbjct: 73  NFSHMEVQLMDWMVNTKGMSMTYARYALHLELLYSVYGIEAAEEYFSG 120


>04_04_0075 -
           22542486-22542882,22543181-22543362,22543452-22543637,
           22543959-22544057,22546198-22546314,22547739-22547855
          Length = 365

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 300 NASIKSCVKNFCSDTT 253
           N+SI SC+KNFCS  T
Sbjct: 205 NSSITSCLKNFCSTET 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,849,222
Number of Sequences: 37544
Number of extensions: 291343
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)