Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060162.seq
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   29   2.6  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_5338| Best HMM Match : rve (HMM E-Value=0.0034)                     28   7.8  

>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 314 DMEEISKXYNXLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYKH 487
           +ME ++K  +  VL  QQ+ A K NW+ +    I  K  + + + +Y    +  K K+
Sbjct: 129 EMETLTKKNSSEVLETQQRQASKKNWEILFTLQITNKRVYMQYLPKYRSPHFNIKSKY 186


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 254 VVSEQKFLTQDFILAFGDLL-DMEEISKXYNXLVLSVQQKYAHKL 385
           ++SEQKF      L +G ++ ++E IS+ +N   +SVQQ YA  L
Sbjct: 72  LISEQKFQQ----LGWGAVVANLESISREFNDRAVSVQQSYAEFL 112


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 127  RANVTDAPILFTCFATNWIGKLFQFCRCRXQSPTGLNRI 243
            RAN T+AP+L T FA  W+    Q+C        G + I
Sbjct: 1490 RANCTNAPLLRTLFAKLWLTS--QYCPASLDLVCGTDNI 1526


>SB_5338| Best HMM Match : rve (HMM E-Value=0.0034)
          Length = 537

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 347 LVLSVQQKYAHKLNWKRIVASHILLKEWFKE 439
           LVLS+ +   +KL  K ++  H+ L+ W++E
Sbjct: 81  LVLSILRNLTNKLRNKLLMNLHVRLRRWWRE 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,980,956
Number of Sequences: 59808
Number of extensions: 360027
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)