Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060162.seq
         (664 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    25   2.8  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   3.7  
AY146743-1|AAO12103.1|  192|Anopheles gambiae odorant-binding pr...    23   8.6  

>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 257 VSEQKFLTQDFILAFGDLLDMEEISKXY 340
           + E  F+TQ F+L   D+ D E I K +
Sbjct: 146 LGEGNFVTQSFLLLVEDINDNEPIFKPF 173


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -3

Query: 656  DPTXGMLWADQF------LVXARGLSRKQSKMSASLILTQSCMYADKLTFSIQLA 510
            DP   M + D F      ++  R L R+ SK S  +  T     A+ +TF  QLA
Sbjct: 2913 DPALYMSFVDGFTTATVGVLFLRNLPRQISKWSGKVKRTVDIFVANMITFRAQLA 2967


>AY146743-1|AAO12103.1|  192|Anopheles gambiae odorant-binding
           protein AgamOBP11 protein.
          Length = 192

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 431 FKEPIKQYIDYDY 469
           F+EPI +Y+DY +
Sbjct: 159 FQEPIAKYLDYHF 171


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,869
Number of Sequences: 2352
Number of extensions: 13365
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)