Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060162.seq
(664 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X53587-1|CAA37656.1| 1822|Homo sapiens integrin beta 4 protein p... 30 8.5
X52186-1|CAA36433.1| 1805|Homo sapiens integrin beta 4 subunit p... 30 8.5
X51841-1|CAA36134.1| 1752|Homo sapiens protein ( Human mRNA for ... 30 8.5
U66541-3|AAC51632.1| 1752|Homo sapiens beta4-integrin protein. 30 8.5
U66541-2|AAC51634.1| 1805|Homo sapiens beta4-integrin protein. 30 8.5
U66541-1|AAC51633.1| 1822|Homo sapiens beta4-integrin protein. 30 8.5
BC126411-1|AAI26412.1| 1752|Homo sapiens integrin, beta 4 protein. 30 8.5
BC118916-1|AAI18917.1| 1752|Homo sapiens ITGB4 protein protein. 30 8.5
BC109238-1|AAI09239.1| 644|Homo sapiens ITGB4 protein protein. 30 8.5
AF011375-1|AAB65421.1| 964|Homo sapiens integrin variant beta4E... 30 8.5
AB208913-1|BAD92150.1| 1515|Homo sapiens integrin beta 4 isoform... 30 8.5
>X53587-1|CAA37656.1| 1822|Homo sapiens integrin beta 4 protein
protein.
Length = 1822
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 629 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 671
>X52186-1|CAA36433.1| 1805|Homo sapiens integrin beta 4 subunit
protein.
Length = 1805
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 629 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 671
>X51841-1|CAA36134.1| 1752|Homo sapiens protein ( Human mRNA for
integrin beta(4)subunit. ).
Length = 1752
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 629 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 671
>U66541-3|AAC51632.1| 1752|Homo sapiens beta4-integrin protein.
Length = 1752
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 629 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 671
>U66541-2|AAC51634.1| 1805|Homo sapiens beta4-integrin protein.
Length = 1805
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 629 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 671
>U66541-1|AAC51633.1| 1822|Homo sapiens beta4-integrin protein.
Length = 1822
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 629 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 671
>BC126411-1|AAI26412.1| 1752|Homo sapiens integrin, beta 4 protein.
Length = 1752
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 629 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 671
>BC118916-1|AAI18917.1| 1752|Homo sapiens ITGB4 protein protein.
Length = 1752
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 629 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 671
>BC109238-1|AAI09239.1| 644|Homo sapiens ITGB4 protein protein.
Length = 644
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 546 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 588
>AF011375-1|AAB65421.1| 964|Homo sapiens integrin variant beta4E
protein.
Length = 964
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 629 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 671
>AB208913-1|BAD92150.1| 1515|Homo sapiens integrin beta 4 isoform 3
precursor variant protein.
Length = 1515
Score = 29.9 bits (64), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 460 LRLCVQIQALERGANKHASCMENVNLSAYMQDCVKISDALILDC 591
LR CVQ QA G K +C E N M D +K ++ +++ C
Sbjct: 661 LRSCVQCQAWGTGEKKGRTC-EECNFKVKMVDELKRAEEVVVRC 703
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,727,452
Number of Sequences: 237096
Number of extensions: 1581629
Number of successful extensions: 2489
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2489
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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