Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060162.seq
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 31 0.73
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 31 0.73
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 31 0.73
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 31 0.73
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 31 0.73
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 31 0.73
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 31 0.73
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.8
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 31.1 bits (67), Expect = 0.73
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 305 DLLDMEEISKXYNXLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYK 484
D L + E K Y V+ Q L W+ L K WF P YID++ + KY
Sbjct: 379 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKYF 434
Query: 485 HLNAALINMRAVWKT 529
N AL +++ ++T
Sbjct: 435 E-NGALKDLKLDYET 448
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 31.1 bits (67), Expect = 0.73
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 305 DLLDMEEISKXYNXLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYK 484
D L + E K Y V+ Q L W+ L K WF P YID++ + KY
Sbjct: 383 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKYF 438
Query: 485 HLNAALINMRAVWKT 529
N AL +++ ++T
Sbjct: 439 E-NGALKDLKLDYET 452
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 31.1 bits (67), Expect = 0.73
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 305 DLLDMEEISKXYNXLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYK 484
D L + E K Y V+ Q L W+ L K WF P YID++ + KY
Sbjct: 378 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKYF 433
Query: 485 HLNAALINMRAVWKT 529
N AL +++ ++T
Sbjct: 434 E-NGALKDLKLDYET 447
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 31.1 bits (67), Expect = 0.73
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 305 DLLDMEEISKXYNXLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYK 484
D L + E K Y V+ Q L W+ L K WF P YID++ + KY
Sbjct: 285 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKYF 340
Query: 485 HLNAALINMRAVWKT 529
N AL +++ ++T
Sbjct: 341 E-NGALKDLKLDYET 354
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 31.1 bits (67), Expect = 0.73
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 305 DLLDMEEISKXYNXLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYK 484
D L + E K Y V+ Q L W+ L K WF P YID++ + KY
Sbjct: 336 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKYF 391
Query: 485 HLNAALINMRAVWKT 529
N AL +++ ++T
Sbjct: 392 E-NGALKDLKLDYET 405
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 31.1 bits (67), Expect = 0.73
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 305 DLLDMEEISKXYNXLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYK 484
D L + E K Y V+ Q L W+ L K WF P YID++ + KY
Sbjct: 418 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKYF 473
Query: 485 HLNAALINMRAVWKT 529
N AL +++ ++T
Sbjct: 474 E-NGALKDLKLDYET 487
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 31.1 bits (67), Expect = 0.73
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 305 DLLDMEEISKXYNXLVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQYIDYDYVFKYK 484
D L + E K Y V+ Q L W+ L K WF P YID++ + KY
Sbjct: 492 DPLPIVEKLKIYRNFVIMRQSVEEPYLTWRH----GGLEKRWFVMPNNTYIDFNNIAKYF 547
Query: 485 HLNAALINMRAVWKT 529
N AL +++ ++T
Sbjct: 548 E-NGALKDLKLDYET 561
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 160 TCFA-TNWIGKLFQFCRCRXQSPTGLNRIXXGRGV*AKIFDARFYTRVWRLVG 315
TC + TN + K+ + R ++ G+ +IFDA Y VW +VG
Sbjct: 259 TCKSYTNSLHKIAMDIKARKTDANDPYQVNFIMGLRERIFDANIYQPVWNVVG 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,055,828
Number of Sequences: 27780
Number of extensions: 273309
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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