Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060162.seq
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45230.1 68414.m05193 defective chloroplasts and leaves prote...    31   0.52 
At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.4  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    28   6.4  
At2g30680.1 68415.m03741 expressed protein weak similarity to ca...    28   6.4  
At5g35917.1 68418.m04317 cytochrome P450, putative similar to Cy...    27   8.4  

>At1g45230.1 68414.m05193 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to
           defective chloroplasts and leaves (DCL) protein
           SP:Q42463 from [Lycopersicon esculentum]
          Length = 219

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 376 CVFLLHRQHEXIVXFGYFFHVQQVAKREYKILRQKFLLRH 257
           C+F++ +  E +V F Y+  ++ + K++Y +    F+LRH
Sbjct: 173 CMFIVRKDGE-VVDFSYWKCIKGLIKKKYPLYADSFILRH 211


>At5g20360.1 68418.m02422 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein contains Pfam profiles PF00564:
           PB1 domain, PF00515: TPR Domain
          Length = 809

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 347 LVLSVQQKYAHKLNWKRIVASHILLKEWFKEPIKQY 454
           L L +QQ    +L+W  ++ SH+ LK W    + Q+
Sbjct: 602 LALGLQQFEEARLSWYYVLVSHLDLKTWPYADVVQF 637


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; contains
           Pfam profile PF00730: HhH-GPD superfamily base excision
           DNA repair protein
          Length = 1729

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 330 DISSMSNKSPNASIKSCVKNFCSDTTTXSNA 238
           ++  MSNKSP  ++KSC K    D     +A
Sbjct: 111 NVGDMSNKSPEVTLKSCRKALNFDLENPGDA 141


>At2g30680.1 68415.m03741 expressed protein weak similarity to
           callose synthase 1 catalytic subunit [Arabidopsis
           thaliana] GI:13649388
          Length = 178

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 254 VVSEQKFLTQDFILAFGDLLDMEEISKXYNXLVLSVQQKYAHK 382
           ++SE   L  +F+ A  D+  + EI + YN + L +  KY+ K
Sbjct: 131 LLSEDVQLPSEFLEADADVKQLAEIFRPYNIIPLYICGKYSMK 173


>At5g35917.1 68418.m04317 cytochrome P450, putative similar to
           Cytochrome P450 79A2 (SP:Q9FLC8) {Arabidopsis thaliana}
          Length = 490

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 281 QDFILAFGDL-LDMEEISKXYNXLVLSVQQKYAHKLNWKRIVASHILLKEWFK 436
           QD + A   L +  E  S+ Y  L ++VQ +       +R+VASH+  K+ FK
Sbjct: 106 QDSVFAIRPLTMGTEYCSRGY--LTIAVQSQGEQWKKMRRVVASHVTSKKSFK 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,409
Number of Sequences: 28952
Number of extensions: 240338
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)