Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060160.seq
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    31   0.20 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   1.4  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   7.4  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 95  RTLRNIKDRSLFRQQSNHRLTNAVEIFDILSLNGQQLDIL 214
           + LRNI ++ L  + S   +T+ + +F    LN QQ+D+L
Sbjct: 361 KALRNILEKDLKNKHSWKHITDQIGMFCYTGLNPQQVDVL 400


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 603 KKKKVAYVHQRQCRLLMEKEFFKSVQ*FRSLLKQTNKQIFPLYNISIDIHN 451
           KK +  + H+ +  LL   +  K     R + K  NK++  L+  S+ IHN
Sbjct: 542 KKLREQFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHN 592


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 119 RSLFRQQSNHRLTNAVEI-FDILSLNGQQL 205
           RS+F   S+H   +   + FDIL LNG+ L
Sbjct: 373 RSIFEDSSSHSSYSPYYVVFDILYLNGKSL 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,719
Number of Sequences: 5004
Number of extensions: 40471
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)