Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060160.seq
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1392 - 26238885-26239007,26239137-26239235,26239636-262397...    28   5.8  
06_01_0317 + 2281564-2283855                                           28   7.7  

>07_03_1392 -
           26238885-26239007,26239137-26239235,26239636-26239720,
           26239825-26240028,26240360-26240682,26241904-26242575
          Length = 501

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 324 DTKKISKIPLQPNVYKTTFFYLTIKRNENAVMTRLIFKISSC--CPFSD 184
           DT K   I + P+  +   FYL  K NE+ + + ++F +S+C  C + D
Sbjct: 291 DTLKQLYIHVPPDAKELYLFYLLSKMNEDNIRSVIVF-VSTCRTCQYLD 338


>06_01_0317 + 2281564-2283855
          Length = 763

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/35 (25%), Positives = 25/35 (71%)
 Frame = +2

Query: 140 SNHRLTNAVEIFDILSLNGQQLDILNIRRVITAFS 244
           ++ + + AVE+F+ L +NG+++  + + +++ AF+
Sbjct: 241 THEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFA 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,008
Number of Sequences: 37544
Number of extensions: 208321
Number of successful extensions: 360
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)