Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060160.seq
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)         29   3.4  
SB_13063| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)                    28   7.9  
SB_33962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
          Length = 652

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 397 KCDCFILLFHYLCTILLFIMNIYTNIIKRKDLFVCLF 507
           +CD  +  FH  CT+L   +  Y    +  DL++CLF
Sbjct: 164 QCDICLEWFHLKCTVL--SVKEYNYFSRTNDLWICLF 198


>SB_13063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 327 EDTKKISKIPLQPNVYKTT--FFYLTIKRNENAVMTRLIFKISSCCPFSDKISKIS 166
           E  ++I  +PL PN    +  FF+L +KR  N    +++ ++   C  S  +  +S
Sbjct: 178 EVIEEIGAMPLAPNSVDQSKKFFHLPLKRLSNCFGAKMLARVDVICTLSILVMCVS 233


>SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)
          Length = 955

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 244 ISFDRQIKESRL-IDIRLERNFANFFCVFVLSNG 342
           +S   ++KE RL ID   E +F N+ CV   S G
Sbjct: 701 VSLQTRVKEGRLLIDEMREEDFGNYSCVATNSRG 734


>SB_33962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 244 ISFDRQIKESRL-IDIRLERNFANFFCVFVLSNG 342
           +S   ++KE RL ID   E +F N+ CV   S G
Sbjct: 177 VSLQTRVKEGRLLIDEMREEDFGNYSCVATNSRG 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,678,630
Number of Sequences: 59808
Number of extensions: 260139
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)