Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060160.seq
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U20861-10|AAA62292.1|  213|Caenorhabditis elegans Hypothetical p...    28   6.8  
U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical
           protein K11E4.4 protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 409 FILLFHYLCTILLFIMNIYTNIIKRKDLFVCLFQ 510
           F LLFHY   IL+ ++ I+  I     ++VC  Q
Sbjct: 50  FRLLFHYNAKILMILLTIFILIFSLDIVYVCTRQ 83


>U20861-10|AAA62292.1|  213|Caenorhabditis elegans Hypothetical
           protein C28H8.4 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 372 TILYTFYFYLTITQYEDTKKISKIPL 295
           T+LY  +FYL +T+   T+K  ++P+
Sbjct: 188 TVLYADFFYLYVTRVVQTRKGMELPI 213


>U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical
           protein K05F1.1 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 412 ILLFHYLCTILLFIMNIYTNIIKRKDLFV 498
           ++ F+Y+  I LF+ ++ TN + RK L +
Sbjct: 1   MIFFNYILLIYLFLSSVGTNYVARKKLIL 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,108,324
Number of Sequences: 27780
Number of extensions: 218058
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)