Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060160.seq
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59600.1 68418.m07468 pentatricopeptide (PPR) repeat-containi...    31   0.91 
At3g18910.1 68416.m02401 F-box family protein contains Pfam:PF00...    29   3.7  
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr...    27   8.5  

>At5g59600.1 68418.m07468 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 534

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 140 SNHRLTN-AVEIFDILSLNGQQLDILNIRRVITAFS 244
           +NH L + AVE+FD +   G++LD L    ++TA S
Sbjct: 365 ANHGLADKAVELFDQMEATGEKLDHLTFTAILTACS 400


>At3g18910.1 68416.m02401 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 388

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 564 RLLMEKEFFKSVQ*FRSLLKQTNKQIFPLYNISIDIH 454
           R+L  K F KS + FRSL  + + +IFP   IS ++H
Sbjct: 43  RILASKHFEKSAKQFRSLSLRNDYRIFP---ISFNLH 76


>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF00646: F-box domain, PF01344: Kelch motif
          Length = 372

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 291 PNVYKTTFFYLTIKRNENAVMT 226
           PN  +TTF + T++RN+N + T
Sbjct: 86  PNRNRTTFHWFTLRRNDNKMNT 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,035,322
Number of Sequences: 28952
Number of extensions: 188285
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)