Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060158.seq
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    79   4e-16
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.0  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   5.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 79.0 bits (186), Expect = 4e-16
 Identities = 42/82 (51%), Positives = 47/82 (57%)
 Frame = -3

Query: 501 DIPFQDTY*VVAHXHXVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFTIFIGVNI 322
           DI F DTY VVAH H VLS               P   GL  N  +  IQF+ +FIGVNI
Sbjct: 371 DIAFHDTYFVVAHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFWILFIGVNI 429

Query: 321 TFFPQHFLGLAGIPRRYSDYPD 256
            F PQHFLGL G+PRR  DYP+
Sbjct: 430 VFGPQHFLGLNGMPRRIPDYPE 451


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 198 TDNREIYEPNEEIIFHEIYSLDNLNIVEVFQLNLKNVVEKMLYLLQ 335
           T NRE+ E NEEI+   +  + ++ I    +L+L+N +  +L  L+
Sbjct: 452 TTNREVEEENEEILLVLLNIISSV-IGRNAELDLENPISSLLPALE 496


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 225 NEEII-FHEIYSLDNLNIVEVFQLNLKNVVEKMLY 326
           +EE++ + +IY   NLN +E+ Q+ L+ + E + Y
Sbjct: 399 SEELVNYAKIYEKSNLNCIELVQILLRLLSEVVTY 433


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -3

Query: 399 PLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDYIFHE 241
           P+F  +   +Y+L++    I    +    P H++  A + R +++Y DYIF++
Sbjct: 392 PVFARMLFPTYMLRLHLGDISPQKD----PDHYI--ACVTRLFAEYKDYIFNQ 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,898
Number of Sequences: 5004
Number of extensions: 27853
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)