Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060158.seq
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   87   1e-17
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   1e-12
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.016
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.016
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.016
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.016
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.016
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.016
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   5.4  
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)                   27   9.5  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 44/84 (52%), Positives = 49/84 (58%)
 Frame = -3

Query: 507 SXDIPFQDTY*VVAHXHXVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFTIFIGV 328
           S D+   DTY VVAH H VLS              +   TG   N    KI F+ +FIGV
Sbjct: 66  SLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGV 125

Query: 327 NITFFPQHFLGLAGIPRRYSDYPD 256
           NITFFPQHFLGLAG PRRYSD+ D
Sbjct: 126 NITFFPQHFLGLAGFPRRYSDFAD 149



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 121 SIE*YQNLPPAEHSYNELPIL 59
           S+E  Q  PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 31/45 (68%), Positives = 34/45 (75%)
 Frame = -3

Query: 390 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 256
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 121 SIE*YQNLPPAEHSYNELPIL 59
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 306 HFLGLAGIPRRYSDYPD 256
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 121 SIE*YQNLPPAEHSYNELPIL 59
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 306 HFLGLAGIPRRYSDYPD 256
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 306 HFLGLAGIPRRYSDYPD 256
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 121 SIE*YQNLPPAEHSYNELPIL 59
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 306 HFLGLAGIPRRYSDYPD 256
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 121 SIE*YQNLPPAEHSYNELPIL 59
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 306 HFLGLAGIPRRYSDYPD 256
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 121 SIE*YQNLPPAEHSYNELPIL 59
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 306 HFLGLAGIPRRYSDYPD 256
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 121 SIE*YQNLPPAEHSYNELPIL 59
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 403 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 281
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 132 ISHHQLNDIKIYHQQNIHIMNYQF 61
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 327 NITFFPQHFLGLAGIPRRY 271
           +I F  +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192


>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
          Length = 596

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 272 YRRGIPAKPKKCCGKNVIFTP 334
           Y R I A+ K+C GKNV+  P
Sbjct: 120 YFRAIIARCKECLGKNVVLIP 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,198,618
Number of Sequences: 59808
Number of extensions: 168962
Number of successful extensions: 284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)