Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060157.seq
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 29 0.81
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 28 1.1
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 2.5
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 27 2.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 5.7
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 5.7
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.6
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 25 10.0
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 25 10.0
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 28.7 bits (61), Expect = 0.81
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 375 WFPRRSWS-VACKRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGWFTL-HHPRPTAS 539
W PR + + C PY L+S +W + TC ++ + L +HP T+S
Sbjct: 7 WKPREPKNALTCDPPVPYDLQSSYQWQSILEHDTCYAAEVFDKMMIELVYHPERTSS 63
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 394 GPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHH 492
G +HA+ H P ++ NGA T PP++H
Sbjct: 277 GMTHAQPTHN-PTSSYGNGASTNYNASRPPSNH 308
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +2
Query: 26 LLCSGNKQLSSAKSNVKFCVFICDYHGDSVFSRRH---NKSVTIFKRNEENRSL 178
+L KQ+S + F C+Y D ++ H + +F RN EN S+
Sbjct: 391 MLAKPTKQISEVLNTFDQAAFTCEYKYDGERAQVHFTEDGKFYVFSRNSENMSV 444
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +1
Query: 145 NFQEKRRKPISRTPHYTRRRDVGDAETATLLPLRLAPMPWAMLHEFSEAVCRGCVNYEGA 324
+++E R+K + + +D+ + + + MPW + + F+E V E
Sbjct: 86 SWKEVRKKAKEQDANPADTKDLFEEVDSKTRSMNAVAMPWEVKNMFTEPVPETEEFEEDN 145
Query: 325 DRIEVVLETARQLKRA 372
D +E+ T ++LK A
Sbjct: 146 DTMEMAYATRQRLKMA 161
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 477 TSSSPYTDGWFTLHHPRPT---ASAGLLAEYGSRRDEHE 584
+++SP+ D L PRP AS G LAE G +HE
Sbjct: 25 SAASPFIDS--DLETPRPNISRASTGQLAEDGDTSSQHE 61
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 403 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 498
H G H P H E P PP HH P
Sbjct: 201 HEPGEHMPPPPMHHKPGEH---MPPPPMHHEP 229
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 403 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 498
H G H P H E P PP HH P
Sbjct: 214 HKPGEHMPPPPMHHEPGEH---MPPPPMHHEP 242
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 403 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 498
H G H P H E P PP HH P
Sbjct: 227 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 255
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 403 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 498
H G H P H E P PP HH P
Sbjct: 240 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 268
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 403 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 498
H G H P H E P PP HH P
Sbjct: 253 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 281
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 403 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 498
H G H P H E P PP HH P
Sbjct: 266 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 294
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 403 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 498
H G H P H E P PP HH P
Sbjct: 279 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 307
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 403 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 498
H G H P H E P PP HH P
Sbjct: 292 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 320
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 403 HAKGAHRTPLEAHQNGAETTRGQPAPPAHHTP 498
H G H P H E P PP HH P
Sbjct: 305 HEPGEHMPPPPMHHEPGEH---MPPPPMHHEP 333
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 489 VSWRCRLSSCCFCSILMGF*GRTVCSFCMRRTT 391
+ WR RL C +IL R CS R TT
Sbjct: 244 IPWRGRLGYACLNTILRSMKERVFCSRTCRITT 276
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 41 NKQLSSAKSNVKFCVFICDYHGDSVFSRRHNKSVTIFKRNEENRSLALRTTPGGEMSVMQ 220
++Q SA + +CD H S FS ++ + + +E S+ L +PG +S+
Sbjct: 541 SQQTESASKSSSNISEMCDSHPPSNFSISASQQASKDRFSEATSSIDLDLSPGRSLSLAS 600
Query: 221 KR 226
+
Sbjct: 601 SK 602
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 172 ISRTPHYTRRRDVGDAETATLLPLRLAPMPWAMLHEFSEAVCRGCVN 312
ISR P + + E A L L+ P L E+ + +CR C++
Sbjct: 254 ISRCPLNACKIAGQETELADLFSLQKVPACIYCLREWKKPICRYCID 300
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 374 MVSKKVVVRRMQKEHTV 424
++SKKV+VRR + HTV
Sbjct: 296 VLSKKVIVRRKEVAHTV 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,085
Number of Sequences: 5004
Number of extensions: 48940
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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