Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060157.seq
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0637 - 12491706-12492575,12492580-12492657 32 0.36
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 4.5
06_01_0887 + 6803937-6804030,6804101-6804204 29 4.5
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 29 4.5
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 5.9
06_02_0155 + 12380452-12381012 28 5.9
12_02_0046 + 12830974-12832386 28 7.8
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 28 7.8
02_01_0623 - 4676847-4676879,4676953-4677115,4677467-4677620,467... 28 7.8
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 381 PRRSWSVACKRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGWFT 512
P SW + S P R+P R+ R T T+ SP+ W T
Sbjct: 94 PASSWICGTEGSPPTRSRTPRSSRRSPARATSTTHSPFCHSWRT 137
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 413 PFACDGPRPSWKP*ARFSCLAVSRTTSIRSAPS*FTHPRHTASENSCNIAHG 258
PFA P PSW+P S ++ S S T PR + S S ++ G
Sbjct: 178 PFALQPPTPSWRPSTPPSAKTLTPPRRSPSPASTLTPPRRSPSPASRRMSTG 229
>06_01_0887 + 6803937-6804030,6804101-6804204
Length = 65
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 26 LLCSGNKQLSSAKSNVKFC 82
L+CSG K+L+S+ N KFC
Sbjct: 27 LMCSGYKELASSLRNKKFC 45
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 397 PSH--AKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGLRYTIHDLRLVQA 546
PSH A+ R+P QN + + +PP+ P V +R +H L +++A
Sbjct: 777 PSHSSARQCARSPSCNMQNTGDHGETEGSPPSSSEPEVTIRNILHALHILKA 828
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 191 TPGGEMSVMQKRQHCYLCDLPPCRGQCCMSFQKQCVEG 304
T G + Q CY CDL +G CC K C +G
Sbjct: 1598 TSSGSNFMEQHWYFCYTCDLTVSKG-CCSVCAKVCHQG 1634
>06_02_0155 + 12380452-12381012
Length = 186
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 394 GPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHT 495
GP+ G H+ H GA G APPA T
Sbjct: 28 GPNDGDGGHKPSPPPHAGGAVNGNGGAAPPAPAT 61
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 436 AHQNGAETTRGQPAPPAHHTP 498
AHQ A T +PAPP H P
Sbjct: 160 AHQESAALTPQEPAPPLAHAP 180
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +3
Query: 414 STPYALRSPSKW-SRNNKRTTCTSSSPYTDGWFTLHHPRPTAS 539
STP+A P + S N T P TD W T HP P S
Sbjct: 35 STPHA---PGPYTSSTNAEAIATQPYPLTDKWATNLHPGPITS 74
>02_01_0623 -
4676847-4676879,4676953-4677115,4677467-4677620,
4678413-4678554,4678641-4678706,4679389-4679922
Length = 363
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = +1
Query: 208 VGDAETATLLPLRLAPMPWAMLHEFSEAVCRGCVNYEGA-DRIEVVLETARQLKRAHGFQ 384
VGD + A L+ P W + + C+ C+ E D++ V ++
Sbjct: 214 VGDVDNAALVAWTTTP--WTLPSNLALCQCKICLCQETRLDQLPVTVKVT---------- 261
Query: 385 EGRGPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGLRYT 519
G+ P +KG+ A +NG +T + H + VGLRYT
Sbjct: 262 -GKKPGPSKGSSG----AAKNGLDTESYELLEKIHGSSLVGLRYT 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,215
Number of Sequences: 37544
Number of extensions: 383508
Number of successful extensions: 1111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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