Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060157.seq
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_31539| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084) 30 2.0
SB_34968| Best HMM Match : Plasmid_killer (HMM E-Value=4.3) 29 2.6
SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_25216| Best HMM Match : DUF1589 (HMM E-Value=8.4) 28 6.0
SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 28 6.0
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/75 (41%), Positives = 44/75 (58%)
Frame = +1
Query: 259 PWAMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPSHAKGAHRTPLEA 438
PWA+LH+FSE +CRGC NYEGA+RIE ++ +R L++ E R H G L +
Sbjct: 19 PWAILHDFSEPICRGCCNYEGAERIEDIIHYSRLLRKNWEKSE-RNAQH--GVKNDRLNS 75
Query: 439 HQNGAETTRGQPAPP 483
+ +T P+PP
Sbjct: 76 TGSSVSST---PSPP 87
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2
Query: 221 KRQHCYLCDLP 253
+RQHC+LCDLP
Sbjct: 6 QRQHCFLCDLP 16
>SB_31539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 835
Score = 32.3 bits (70), Expect = 0.37
Identities = 27/109 (24%), Positives = 38/109 (34%)
Frame = +1
Query: 118 FPKA**ISDNFQEKRRKPISRTPHYTRRRDVGDAETATLLPLRLAPMPWAMLHEFSEAVC 297
+PK + D + K T H R G T L L+ W + +SE +
Sbjct: 723 WPKVLMVDDGTEFKGATTKLLTDHGVEARRAGPGTTGAKLSPSLSIAGWHSAYFYSEELA 782
Query: 298 RGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPSHAKGAHRTPLEAHQ 444
G N E + +V+ K G P A R PLEA +
Sbjct: 783 SGETNREWVTALPIVISDINATKTR---MTGVAPKDAIKLRRVPLEAEK 828
>SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 408 KRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGWFTLHHPRP 530
+ S + R+PS S + C ++S TDG+ T+H+ P
Sbjct: 286 EHSPNFCERNPSAGSLGTQGRECNTTSMGTDGYLTMHYMTP 326
>SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)
Length = 292
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +3
Query: 381 PRRSWSVACKRSTP---YALRSPSKWSRNNKRTTCTSSSPYTDGWFTLHHPRPTAS 539
PRRS+ V+C + +P Y + R + R +C SP + HP P S
Sbjct: 150 PRRSYRVSCVQPSPRRSYRVSCVQPSPRRSYRVSCVQPSPRRSYRVSCVHPSPRRS 205
>SB_34968| Best HMM Match : Plasmid_killer (HMM E-Value=4.3)
Length = 387
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 157 KRRKPISRTPHYTRRRDVGDAETATLLPLRLAPMPWAML----HEFSEAVCRGCVNYEGA 324
+R + S+T H+ R GDA L L L P+ W + ++ S+ +C +
Sbjct: 54 ERGRETSQTIHFNRGLPQGDALCTRLFTLCLNPVAWKLASTEGYKMSKPICAKITSLLYI 113
Query: 325 DRIEVVLETARQLKR 369
D ++V + +L R
Sbjct: 114 DDLKVYAASEAKLNR 128
>SB_58854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 403 HAKGAHRTPLE-AHQNGAE--TTRGQPAPPAHHTPT 501
H + AHRT + H A TT+ QP PAH T T
Sbjct: 35 HTEPAHRTSTQNQHTEPAHRTTTQNQPTEPAHRTTT 70
>SB_25216| Best HMM Match : DUF1589 (HMM E-Value=8.4)
Length = 313
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 352 ARQLKRAHGFQEGRGPSHAKGAHRTPLEAHQNGAETTRGQPAPPAHHTPTVGLR 513
AR +++A+ +E GP H +G R+ + T+ + HTP GLR
Sbjct: 216 ARSIRQAYADREHEGPIHTQGLRRSRTRKSDPYSRLTQIENTQDPIHTP--GLR 267
>SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 1347
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +2
Query: 128 HNKSVTIFKRNEENRSLALRTTPGGE-MSVMQKRQH-CYLCDLPPCRGQCCMSFQKQCVE 301
H K I +RNE R L L GG M M + H C C + Q C F K
Sbjct: 805 HEKRALIMRRNEVARYLTLSRAGGGRTMPAMLQDPHTCKRCS----QAQNCSVFHKSLES 860
Query: 302 GV*IT 316
G +T
Sbjct: 861 GDHVT 865
>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 80 CVFICDY-HGDSVFSRRHNKSVTIFKR 157
CV +C Y H SVF RR++ SV + R
Sbjct: 689 CVVMCRYVHNVSVFMRRYDTSVRVVMR 715
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,705,728
Number of Sequences: 59808
Number of extensions: 429467
Number of successful extensions: 1235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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