Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060157.seq
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.0  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   2.7  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   2.7  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   2.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 418 HRTPLEAHQNGAETTRGQPAPPAHH 492
           HR     HQ+G  T      PP HH
Sbjct: 329 HRGSSPHHQHGNHTMGPTMGPPHHH 353


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 390 SWSVACKRSTPYALRSPSKWSRNNKRT 470
           +W +AC  S P A    SK  R N  T
Sbjct: 11  AWFIACTHSFPGAHDEDSKEERKNVDT 37


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 390 SWSVACKRSTPYALRSPSKWSRNNKRT 470
           +W +AC  S P A    SK  R N  T
Sbjct: 11  AWFIACTHSFPGAHDEDSKEERKNVDT 37


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 390 SWSVACKRSTPYALRSPSKWSRNNKRT 470
           +W +AC  S P A    SK  R N  T
Sbjct: 11  AWFIACTHSFPGAHDEDSKEERKNVDT 37


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 376 GFQEGRGPSHAKGAHRTPLEAH 441
           GF+ G+G         TP+EAH
Sbjct: 170 GFEPGKGLGKQLQGISTPVEAH 191


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
 Frame = +1

Query: 454 ETTRGQPAPPA------HHTPTVGLRYTIHD 528
           +T R  P PP        H P   +R+ +HD
Sbjct: 265 KTARENPGPPGVPGDHGDHAPKQTVRFKVHD 295


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 271 LHEFSEAVCRGCVNYEGADRIEVVLETARQLKR 369
           +HE   A C   V   G  R+E +L    Q+ R
Sbjct: 65  VHEKGGASCGPNVYNRGVQRLEAMLFAVDQINR 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,332
Number of Sequences: 438
Number of extensions: 3390
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)