Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060156.seq
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 30 1.3
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.7
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.0
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 7.0
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 7.0
01_06_0241 - 27813076-27813622,27813695-27814125 28 7.0
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 27 9.2
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 27 9.2
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 9.2
06_01_0422 + 3034556-3034777,3034859-3035138,3036398-3036483,303... 27 9.2
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 9.2
03_02_0794 + 11241804-11242146,11242277-11242419,11242494-112426... 27 9.2
01_01_0661 - 5036592-5037428,5037529-5037957,5038067-5038261,503... 27 9.2
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 128 RVSSKASTPAVSVTSTPMRRLCFR 199
+VSS++S+P SVT+ +R +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 121 DLKSQLEGFNTSCLRDVDTNEKIVL 195
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 83 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 175
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 97 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 189
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 97 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 189
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 266 EPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 430
EP H + ++ R +R+ ++ + HR RS H A + V + H+
Sbjct: 23 EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 251 IPSNKDFWVFSVATSSADGSTIFSLVSTSRRQLVL 147
+PSN+ + ++ TSS++GS FSL +++ + L
Sbjct: 500 LPSNESWDYYASRTSSSNGSVYFSLQNSTNSDMDL 534
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +2
Query: 104 SPRSPQT*RVSSKASTPAVSVTSTPMRRLCFRLLKTSPL----RRPRSLYSTVSKV*FEP 271
SP + SS P +++ + P R + PL R R + V+++ EP
Sbjct: 10 SPEANTLSPTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVARIGIEP 69
Query: 272 AEAHRDSGEEPAS 310
A R EEP S
Sbjct: 70 AMGRRQQPEEPDS 82
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 32 PLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMRR 187
P P I +++PAP PP ++S R+P SSK P P R
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANR 702
>06_01_0422 +
3034556-3034777,3034859-3035138,3036398-3036483,
3036614-3036837,3036911-3036971,3037634-3037828,
3037981-3038205
Length = 430
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 186 DCASVC*RRRH*EDPEVFIRRYRKFDSSQLKHTET-QEKNPLPDKDAIEAEKEKNKFLNG 362
DCAS C + + Y K + L E+ E+ +K+A + +EK K L
Sbjct: 115 DCASDC-KAAIRALKQSLDEHYHKGTEAILDEAESAMEEMEELEKEAAKHHREKGKELLS 173
Query: 363 IENFDPTKLKHTETCEKNPLPTKDVIEQEK 452
+ + ++ T+ ++NPL ++ ++ K
Sbjct: 174 KKKYKEAAIQFTKAIKRNPLNPRNFSDRAK 203
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 303 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 395
P ++ E EKEK K +N + P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519
>03_02_0794 +
11241804-11242146,11242277-11242419,11242494-11242678,
11242785-11242869
Length = 251
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 143 ASTPAVSVTSTPMRRLCFRLLKTSPLRRPRSLYSTVSKV*FEPAEAH---RDSGEEPASG 313
A A +++ P RL R+ + +PL PR L S SK+ A AH + PA+G
Sbjct: 8 AGAGAAALSLRPQIRL--RITQATPLMPPRRLQSGPSKIQTSGARAHLAAAPASTPPAAG 65
Query: 314 QRCY 325
Y
Sbjct: 66 GGLY 69
>01_01_0661 -
5036592-5037428,5037529-5037957,5038067-5038261,
5038919-5038942,5039436-5039780
Length = 609
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 229 GSSQWRRLQQTEAQSSHWCRRHGD 158
GSS+WRRL EA + + RH D
Sbjct: 406 GSSEWRRLCDDEAHMAAFPNRHFD 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,733,633
Number of Sequences: 37544
Number of extensions: 363053
Number of successful extensions: 1141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -