Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060156.seq
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    56   2e-08
AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    30   1.2  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    27   8.3  
AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear recep...    27   8.3  
AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear horm...    27   8.3  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = +3

Query: 270 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 449
           +LK  ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QE
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 450 K 452
           K
Sbjct: 83  K 83



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 29/72 (40%), Positives = 40/72 (55%)
 Frame = +3

Query: 240 IRRYRKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNP 419
           I     FDS++L  T  +EK  LP  D I+ EK+  +  + I NF    LK TET EKN 
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110

Query: 420 LPTKDVIEQEKS 455
           LP+   + +EK+
Sbjct: 111 LPSPTDVAREKT 122



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 133 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIES 258
           ++E F+++ L      EKIVLPSA+D+  EK    L D I +
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINN 94



 Score = 33.9 bits (74), Expect = 0.096
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 91  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 255
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIE 55



 Score = 33.9 bits (74), Expect = 0.096
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 88  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 228
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122


>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 252 RKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 431
           RK DSS++K ++T   NP    D I +++   +    +  F     K    C    LP  
Sbjct: 550 RKLDSSKVKPSQTSSPNPY--TDTILSDEHLTQLARDLSKFKSNLAK----CFGTKLPAD 603

Query: 432 DVIEQEK 452
           DV   EK
Sbjct: 604 DVTSDEK 610


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 26  FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMRRLCFRLL 205
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P R+      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 206 KTSPLRR 226
             +P+++
Sbjct: 76  TVTPIQQ 82


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 276 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 377
           KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


>Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical
           protein C16C10.6 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
 Frame = +3

Query: 222 EDPEVFIR-RYRKFDSSQLKHTETQEKNPLPDKDAIEAEKEK-------NKFLNGIENFD 377
           +D EVF+   YRK      KH E QE       D    +K+K          LN +   D
Sbjct: 137 DDKEVFVTGAYRKQQEEVKKHRE-QEAEEAAFNDMTSVQKQKLWEIGMGRTLLNDLAR-D 194

Query: 378 PTKLKHTETCEKNPLPTKDVIEQ 446
           PT +K  +  +KN    +D  E+
Sbjct: 195 PTAIKQRKKEQKNVRKREDSDEE 217


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 332 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 469
           G+ + Q P+  +  RS   +  G++   P P      A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365


>AY305846-1|AAR11990.1|  404|Caenorhabditis elegans nuclear receptor
           NHR-126 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 605 HCPRQCCXLYKNKNKTC 555
           HCPR  C  ++NKN  C
Sbjct: 47  HCPRGNCASFENKNLNC 63


>AF016438-11|AAK84530.2|  404|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 126 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 605 HCPRQCCXLYKNKNKTC 555
           HCPR  C  ++NKN  C
Sbjct: 47  HCPRGNCASFENKNLNC 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,867,393
Number of Sequences: 27780
Number of extensions: 293600
Number of successful extensions: 1019
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)