Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060156.seq
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 34 0.089
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 31 0.63
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.83
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.4
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.5
At1g23230.1 68414.m02906 expressed protein 29 3.3
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 4.4
At3g57780.1 68416.m06436 expressed protein 28 4.4
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 28 4.4
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 5.8
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 5.8
At1g51900.1 68414.m05850 hypothetical protein 28 5.8
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 28 5.8
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont... 27 7.7
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 7.7
At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger) fa... 27 7.7
At3g28770.1 68416.m03591 expressed protein 27 7.7
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 27 7.7
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 33.9 bits (74), Expect = 0.089
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Frame = +2
Query: 11 LSARIFYPLPHQKYIDSQWPAP*VTLPP*KT----SPRSPQT*RVSSKASTPAVSVTSTP 178
++ R+ P P + + S PA + PP + SP ++ +P+ S S P
Sbjct: 456 VAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSLSPP 515
Query: 179 MRRLCFRLLKTSPLRRPRSLYSTVSKV*FEPAEAHRDSGEEPASGQRCYRSGEGKEQIPE 358
R+ ++L + P+RR RSL +V H G G GK
Sbjct: 516 GRK---KVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSS 572
Query: 359 RHRELRS 379
RH++ RS
Sbjct: 573 RHQKARS 579
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +3
Query: 276 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 449
K +E P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 270 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQ 446
Q+K + +E+N K+ +E + + K +E + +LK T E+N ++ IE
Sbjct: 778 QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837
Query: 447 EKSAXXXXXXXXXANVSR 500
E+ A + R
Sbjct: 838 EEKEKRLIEAFERAEIER 855
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 252 RKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPT 428
+K + +LK T +E+N ++AIE E+++ + + E + +LK E+ +
Sbjct: 811 QKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRL 870
Query: 429 KDVIEQEK 452
++ E+E+
Sbjct: 871 QEAKERER 878
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 61 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 231
T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133
Query: 232 KS 237
S
Sbjct: 134 SS 135
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 282 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 377
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 432 PLWGAGSSRTFPCASA*WDRSSRC-RSGICSFPSP 331
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 225 LLSGDVFSRRKHNLLIGVDVTETAGVEAFELTLQVCGDLG 106
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 261 DSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 410
DSS+ TE +E N L D E EKE++K L+ I + + ETCE
Sbjct: 72 DSSE--KTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPETCE 120
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +2
Query: 290 SGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 469
S E+ A R + + K + ER + SH ++ ++R EP H RE+ Y
Sbjct: 489 SAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEY 548
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 73 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 225
S SD+PS L+D+ ++ +LK L+G + VDTN AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 270 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 449
QL+ T+ + K P E +K K D K ++ E C P+P + ++E
Sbjct: 413 QLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGEPVPERFIVEMR 467
Query: 450 KS 455
+S
Sbjct: 468 RS 469
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 225 DPEVFIRRYRKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 404
DP+++IR Y + + K + T + + + D+IE K + L+ I LK +
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEG--VKCRMLDEIMKKSGHHLKISRP 419
Query: 405 CEKNPLPTKDVIEQEK 452
E P K V E+E+
Sbjct: 420 -EYKPEIEKQVYEEEE 434
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 104 SPRSPQT*RVSSKASTPAVSVTSTPMRRLCFRLL--KTSPLRRPRSLYSTVSKV*FEPAE 277
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VS+
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 278 AHRDSGEEPAS 310
R P S
Sbjct: 253 RSRSRSNSPVS 263
>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1501
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 321 HLCPEAGSSPESRCASAGSNQTF 253
H PE G + +SR A GSNQ+F
Sbjct: 862 HTGPEKGGTSQSRFAPWGSNQSF 884
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 270 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 449
QL+ T+ + K P E +K I D K ++ E C P+P + ++E
Sbjct: 359 QLEETDVKRKRNAPGPSPKEPAMKKQ-----ISEMDCDKEENAEDCFGEPVPERFIVEMR 413
Query: 450 KS 455
+S
Sbjct: 414 RS 415
>At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 210
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 222 EDPEVFIRRYRKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 401
++ E+ Y FDS+ E + L D+++ +E++ FL + DP +L + E
Sbjct: 62 DEEEINENYYEYFDSNGFGVDEDEINEFLEDQESNSNLEEEDDFLEEEDEIDPDQLSYEE 121
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 276 KHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKD 434
K +E EK + KDA E + NK L+ EN D K + E +++ +KD
Sbjct: 780 KESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKD 833
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 231 EVFIRRYRKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 377
E +R ++ ++ K T K + +KDA EA KE+ NG+ N D
Sbjct: 45 EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,897
Number of Sequences: 28952
Number of extensions: 278036
Number of successful extensions: 879
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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