Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060155.seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   1.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.9  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   2.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   5.9  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   5.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.9  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   7.9  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +2

Query: 257  LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPAMW 427
            L +K  N   ++  V + + K + +K  V+ N   IL NS   W   IK+P   S P   
Sbjct: 904  LYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSM 962

Query: 428  DLVKNTPELADFV 466
            D   N  +L   +
Sbjct: 963  DFTSNDEQLVQLL 975


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 183 KLLNKLESSSYNKSNMDQLIAIVNSWKKRTLTISST*CLS 302
           KL+NK E+       M++L++++ S+   T+    T CL+
Sbjct: 339 KLINKKENPKLRDYGMNKLVSLIESFNNITMESVLTECLN 378


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 544 LRCRLKTTMSIGGHFXPHLFSVIKNEHKICQFGRVFHQIPHGR 416
           ++CR+K  M         +FS +   +K+CQFGR+   I HG+
Sbjct: 20  VQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRI--HIFHGK 60


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +2

Query: 296  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 388
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 69  NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 236
           ++SS+ +   F    ++    + EQ  S +     K  ++LN L    YN  N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 307 LHDRHYVEDIVNVLFF 260
           L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 323 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 454
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -1

Query: 638 KLIANFEALFXSAKXGVXXHPQVGLFWLAGIAALSLEDDDVDRWPFF 498
           KL  ++   + S         Q+G FWL  I  L LE    D W  F
Sbjct: 187 KLFEDYPQYYMSPLFKAYYLIQLG-FWLQQILVLHLEQRRADHWQMF 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,949
Number of Sequences: 5004
Number of extensions: 57332
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)