Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060155.seq
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1469 - 26742772-26743848                                         29   3.5  
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   3.5  
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694...    29   4.6  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    28   6.1  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   6.1  
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206     28   8.1  

>07_03_1469 - 26742772-26743848
          Length = 358

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +2

Query: 458 DFVFIFDHTEKMGXKMATDRHRRLQATTQQFQRAKKXRLAGAXPRQXWRX*RELRNSRLA 637
           D    F   E  G  +      R  AT Q    AK  RLAG  P Q +    E   S LA
Sbjct: 183 DLASCFLAGESAGGNIVHQVANRWAATWQP--TAKNLRLAGMIPVQPYFGGEERTPSELA 240

Query: 638 LXGVYSLXN-RAXPLPWXA 691
           L GV  + N R     W A
Sbjct: 241 LDGVAPVVNLRRSDFSWKA 259


>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 332 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 466
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>03_05_0882 +
           28467691-28467730,28468386-28468675,28469262-28469411,
           28470126-28470214,28470331-28470440,28470545-28470639,
           28471110-28471162,28471374-28471539,28471909-28472001,
           28472304-28472432,28472549-28472668,28472862-28472942,
           28473495-28473602,28473895-28474038,28474120-28474218,
           28474300-28474379,28474830-28474922,28475197-28475320
          Length = 687

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 111 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSY-NKSNMDQLIAIVNSW 260
           +KSN++   E++ +  TA   + +KL+ KLE       S+ D+  +++N W
Sbjct: 410 EKSNLLEEAEKKIAELTAKAEEQQKLILKLEDDILKGYSSTDRRTSLLNDW 460


>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 212  LQQIQHGPANCYCKFLEKKNINYILNVMPVMQDERKMSK 328
            L Q +HG +   C F +  N+ Y +    V+ +E + SK
Sbjct: 983  LDQYEHGCSIISCSFSDDNNVYYCVGTAYVLPEENEPSK 1021


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 380 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 490
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
          Length = 961

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 20  RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 148
           +  FIT     C+    + +KN   +FQR T+I  G   G  +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,105,851
Number of Sequences: 37544
Number of extensions: 364435
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)