Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060155.seq
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117180-1|AAI17181.1| 2527|Homo sapiens leucine-rich repeat kin...    31   5.2  
AY792511-1|AAV63975.1| 2527|Homo sapiens leucine-rich repeat kin...    31   5.2  
AK127729-1|BAC87105.1|  870|Homo sapiens protein ( Homo sapiens ...    31   5.2  

>BC117180-1|AAI17181.1| 2527|Homo sapiens leucine-rich repeat kinase
           2 protein.
          Length = 2527

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = -2

Query: 565 FFGSLELLRCRLKTTMSIGGHFXPHLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDL 386
           F G+  + +C LK   SI  HF P    ++  E  +          P  +  + LGL  +
Sbjct: 553 FIGNPGIQKCGLKVISSIV-HF-PDALEMLSLEGAMDSVLHTLQMYPDDQEIQCLGLSLI 610

Query: 385 SVPTVKQNVFIVVNHLL 335
                K+NVFI   HLL
Sbjct: 611 GYLITKKNVFIGTGHLL 627


>AY792511-1|AAV63975.1| 2527|Homo sapiens leucine-rich repeat kinase
           2 protein.
          Length = 2527

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = -2

Query: 565 FFGSLELLRCRLKTTMSIGGHFXPHLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDL 386
           F G+  + +C LK   SI  HF P    ++  E  +          P  +  + LGL  +
Sbjct: 553 FIGNPGIQKCGLKVISSIV-HF-PDALEMLSLEGAMDSVLHTLQMYPDDQEIQCLGLSLI 610

Query: 385 SVPTVKQNVFIVVNHLL 335
                K+NVFI   HLL
Sbjct: 611 GYLITKKNVFIGTGHLL 627


>AK127729-1|BAC87105.1|  870|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45829 fis, clone NT2RP8006452. ).
          Length = 870

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = -2

Query: 565 FFGSLELLRCRLKTTMSIGGHFXPHLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDL 386
           F G+  + +C LK   SI  HF P    ++  E  +          P  +  + LGL  +
Sbjct: 152 FIGNPGIQKCGLKVISSIV-HF-PDALEMLSLEGAMDSVLHTLQMYPDDQEIQCLGLSLI 209

Query: 385 SVPTVKQNVFIVVNHLL 335
                K+NVFI   HLL
Sbjct: 210 GYLITKKNVFIGTGHLL 226


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,028,686
Number of Sequences: 237096
Number of extensions: 1967662
Number of successful extensions: 3904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3904
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)