Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060155.seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    27   9.6  

>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 415 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 290
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = +2

Query: 284  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNTPELA 457
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+    
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNSAPDV 1142

Query: 458  DFVFIFDHTEKMGXKMATDRHRRLQATTQQFQRAKK 565
            D      +  K   K+  ++     AT++     KK
Sbjct: 1143 DNKKATQYLAKTLAKLIGEKQLLDLATSELDPNRKK 1178


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
 Frame = +2

Query: 311 ERKMSKRKKKVINNNKYILFNSWYTKIKQP--EWPSSPAMWD---LVKNTPELADFVFIF 475
           +++M    KK IN    + F S   K+K     W S+  +     + ++TP LAD+  IF
Sbjct: 602 DQEMKNTGKKAIN---MVEFGSRLKKLKSELEGWKSNITVGGAHRIRRSTPSLADYAHIF 658

Query: 476 DHTEKMGXKMATDRHRRLQATTQQFQRAKK 565
            +  K+G     D  ++L    + F++  K
Sbjct: 659 QNALKVGG--VDDDLKKLMDAVKDFEKTGK 686


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 114 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 236
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQ 161


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
 Frame = -2

Query: 490 LFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLLLA 329
           LF++I +   IC+ G+  ++ P       L L+D+ +     V  ++F+ V   N+LL  
Sbjct: 188 LFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLLTN 247

Query: 328 FGHFAFVLHD 299
            G FA VL +
Sbjct: 248 SGPFASVLRE 257


>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/64 (20%), Positives = 32/64 (50%)
 Frame = +2

Query: 251 KFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWD 430
           +F++ +N+  + N   V++ E +    +  ++ NN Y    +    + +P + + P +WD
Sbjct: 69  RFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYVWD 125

Query: 431 LVKN 442
            + N
Sbjct: 126 TINN 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,432
Number of Sequences: 27780
Number of extensions: 331112
Number of successful extensions: 927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)