Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060155.seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    30   1.7  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   5.1  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   5.1  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   6.8  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   6.8  
At1g34170.1 68414.m04238 transcriptional factor B3 family protei...    28   6.8  
At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family prote...    28   6.8  
At4g33380.1 68417.m04745 expressed protein                             27   8.9  
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    27   8.9  

>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 389 IKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKMGXKMATDRHRRLQATTQQFQRAKKX 568
           IK   WP +   W+ ++N   +AD +  F+ + K G K    R R+      Q +  KK 
Sbjct: 127 IKWRGWPETANTWEPLENLQSIADVIDAFEGSLKPG-KPGRKRKRKYAGPHSQMK--KKQ 183

Query: 569 RL 574
           RL
Sbjct: 184 RL 185


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 151 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 23
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 151 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 23
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 111 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNSWKKRTLTISS 287
           Q S+    P Q ++ +T   CK    + + +SSS  K   D L  I+   +   L++SS
Sbjct: 130 QFSSADGSPSQSNAWDTTVPCKRRTCVGRPKSSSVEKLTKD-LYNILQEQQSSCLSVSS 187


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 348 TTINTFCLTVGTLRSSSPSGLVA 416
           T++ + CLT+GTL    PSG+ A
Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309


>At1g34170.1 68414.m04238 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain;
           contains non-consensus GA donor splice site at intron 12
          Length = 623

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +2

Query: 245 YCKFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAM 424
           Y KF++  N NYI+     MQ E K    K+    +   I  N      K  EW S    
Sbjct: 279 YDKFVDAMNNNYIVGSRFRMQFEGKDFSEKR---YDGTIIGVNDMSPHWKDSEWRSLKVQ 335

Query: 425 WD 430
           WD
Sbjct: 336 WD 337


>At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 324

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = +3

Query: 408 LVARPCGIW*KTRPNWQILCSFLITLKRWGKKWP--PIDIVVFKRQRSNSSEP--KKXDL 575
           LVA  C I  K RP W +   FLI + R+   W   P + ++ K  +    +P  K+  +
Sbjct: 161 LVAPMCKISDKVRPKWPV-DQFLIMISRFLPTWAIVPTEDLLEKSIKVEEKKPIAKRNPM 219

Query: 576 RVXXHAXFGGXKESFEIRD 632
           R       G   E   + D
Sbjct: 220 RYNEKPRLGTVMELLRVTD 238


>At4g33380.1 68417.m04745 expressed protein
          Length = 328

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +3

Query: 144 QSSTETAAVCKN---EKLLNKLESSSYNKSNMDQLIAIVNSWKKRTL 275
           +SSTE +   K+   +++L +L+S   +KSN+ QL  +V +W+   L
Sbjct: 97  ESSTELSPNVKHKLVDEILQRLKSFE-DKSNVTQLREVVETWRNEKL 142


>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 151 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCD 32
           E CC+G F+  + C P K            CPTA+ +V D
Sbjct: 139 EYCCTGAFSKPETCPPTKYSKIFKGA----CPTAYSYVYD 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,062
Number of Sequences: 28952
Number of extensions: 299342
Number of successful extensions: 774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)