Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060154.seq
         (527 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   0.95 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   0.95 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   0.95 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   3.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   6.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 123 TRSTAVLNASSMLRRVRLAVPPQKWKRSRTNPSQIQRSIVY 245
           T +TA+ +A+  ++ V   +PP   + S   P+Q Q +  Y
Sbjct: 254 TTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEY 294


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 123 TRSTAVLNASSMLRRVRLAVPPQKWKRSRTNPSQIQRSIVY 245
           T +TA+ +A+  ++ V   +PP   + S   P+Q Q +  Y
Sbjct: 202 TTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEY 242


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 123 TRSTAVLNASSMLRRVRLAVPPQKWKRSRTNPSQIQRSIVY 245
           T +TA+ +A+  ++ V   +PP   + S   P+Q Q +  Y
Sbjct: 385 TTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEY 425


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 407 SVVFTCVEDGS 375
           SV +TCV DGS
Sbjct: 456 SVYYTCVSDGS 466


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 262 SRPATQ*TIDLCICDGLVLDRFHFCGGTANLTRLNIEDALSTAVLL 125
           ++P ++ + +L      + D  HFC    ++   N E AL TA+++
Sbjct: 419 NQPYSRDSYNLAGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVI 464


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = -3

Query: 453 VVNQHP---IETHFTPLVQ 406
           V  QH    +E HF PLVQ
Sbjct: 117 VAQQHSPADLENHFVPLVQ 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,847
Number of Sequences: 336
Number of extensions: 2106
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)