Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060154.seq
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 30 0.25
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 28 0.99
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 0.99
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 1.7
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 3.0
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 26 4.0
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 5.3
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 25 7.0
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 7.0
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 25 7.0
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.0
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.2
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 9.2
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 29.9 bits (64), Expect = 0.25
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 415 WRKVRLDRMLVDYFLRXGYYEXAWKLAESA 504
W +VRL+R++ DY + GY+ A L + +
Sbjct: 115 WSRVRLNRLVADYMMANGYHGAAALLCKDS 144
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.9 bits (59), Expect = 0.99
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 47 TNIVFKMNEIKSMEHATLKVPYEVFNKKYRSAQRVFDVEA 166
T+++ +N++ A KV YE++N RS R +VEA
Sbjct: 1287 TDVIHVLNKVHDSCQA-YKVNYEIYNALIRSIYRFINVEA 1325
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 0.99
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = -2
Query: 517 SSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGRWPAPSGVPD 338
SS T P+S + S+ SS SS +S + + S+SSS + + + S
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 206
Query: 337 ASXXXXXXXXXXXXXRSLFASSLSTSRPAT 248
+ S +SS S+SRP++
Sbjct: 207 SVPITSSTSSSHSSSSSSSSSSSSSSRPSS 236
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 253 QVEKLTTMKRKASEAINEELQVAYVCXKRLEHLKEQASALAXPSSTQVKTTLNQ 414
+VEKLT + SE N++ KRL+ L+E+ + S+++ L Q
Sbjct: 600 EVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQ 653
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +1
Query: 301 NEELQVAYVCXKRLEHLKEQASALAXPSSTQVKTTLNQWRKV-RLDRMLVDYFLRXGYYE 477
N+ L + C K L+ + ST V + + L L D+ GYYE
Sbjct: 289 NDCLNMFSKCFKFLKQKLSDRKSCKERESTDVTSNFEVEEAILHLLIRLCDFLKNCGYYE 348
Query: 478 XAWKLAES 501
AW + ++
Sbjct: 349 LAWSIFQA 356
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 135 AVLNASSMLRRVRLAVPPQKWKRSRTNPSQIQRSIVYW 248
++L +S L++ L P K +T+ + RSIVYW
Sbjct: 283 SILEFNSRLQK--LVDDPNSLKAIKTSTQNVGRSIVYW 318
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 306 GAPGRLRLXEASGTPEGAGQRPRRXVLHAGEDDAE 410
G P RL L E P+G P++ E+DAE
Sbjct: 554 GLPERLLLEEEDEEPQGYSPNPQKPKPAMEENDAE 588
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 346 HLKEQASALAXPSSTQVKTTLNQW 417
+L + LA P+S ++KTTL +W
Sbjct: 218 YLLKHMELLALPASYELKTTLLEW 241
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 526 TLVSSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRT 380
++ S + TP A+ S GSS S+ +G SSPAW T
Sbjct: 398 SMTMSSNQETPTAASCAVSR--IGSSYGMSNNFGSVPLGRTESSPAWGT 444
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 216 PSQIQRSIVYWVAGREVDNDEAKSERGY 299
PSQ + YWV GR ++ E K++ +
Sbjct: 536 PSQDRSEGRYWVTGRTLEQAEEKAKAAF 563
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 7.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 259 EKLTTMKRKASEAINEELQVAYVCXKRLEHLKEQASALAXPSSTQVKTTLNQWRKVRLDR 438
EKLT+ + E+ ++ + L H + S +A P+S + +L WRK+
Sbjct: 170 EKLTSELQSVEGLQREQRKILFNAIDILSH---EISLIASPNSKKKYKSLYCWRKIFEIY 226
Query: 439 MLVDYFL 459
M D F+
Sbjct: 227 MDSDIFI 233
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 502 RTPPASKRTRSNRSSGSSQPASDRDALYAIGSAS-SSPAW 386
+ PP K R+ GSS ++ R A A+G+ S P++
Sbjct: 58 KLPPPPKHASQLRAGGSSTGSTPRTASPAVGNQDYSKPSY 97
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = +3
Query: 225 IQRSIVYWVAGREVD--NDEAKSERGY*RGAPGRLRLXEASGTPEGAGQRPRRXVLHAGE 398
I+RS+ Y E++ N K+E + S PE P++ +LH
Sbjct: 327 IERSMNYVFGESELEEKNASTKTENDSNEDDKEECQSSSTSSVPESTASTPKKRILHVQN 386
Query: 399 D 401
D
Sbjct: 387 D 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,762
Number of Sequences: 5004
Number of extensions: 35011
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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