Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060154.seq
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0437 + 3471154-3471447,3471664-3471858,3472619-3472741,347... 48 5e-06
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722... 31 0.43
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708... 30 1.0
05_01_0074 + 506803-507963 30 1.0
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 29 2.3
08_02_0879 + 22183052-22183340,22183802-22183949,22184017-22184044 29 3.1
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478... 28 4.0
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 28 4.0
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 28 5.3
01_06_0499 + 29823578-29823754,29823882-29824002,29825103-298252... 28 5.3
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 27 7.1
06_01_1183 + 10157813-10159909 27 7.1
06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278... 27 7.1
02_04_0109 + 19812544-19814474,19814574-19814607 27 7.1
02_01_0507 - 3682383-3682703,3682830-3682970,3683071-3683147,368... 27 7.1
11_03_0078 - 9662677-9663642,9666589-9666747 27 9.3
10_01_0129 + 1535823-1537196 27 9.3
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 27 9.3
01_01_1100 + 8716853-8716860,8717739-8717844,8717931-8718015,871... 27 9.3
>05_01_0437 +
3471154-3471447,3471664-3471858,3472619-3472741,
3473245-3473430,3473633-3473766,3473866-3474052,
3474179-3474280
Length = 406
Score = 48.0 bits (109), Expect = 5e-06
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 VEKLTTMKRKASEAIN-EELQVAYVCXKRLEHLKEQASALAXPSSTQVKTTLNQWRKVRL 432
V +L +KRK E EELQV C RL L ASA + + +W ++RL
Sbjct: 89 VSRLHGLKRKMEEGARAEELQVQR-CRARLNRL---ASASSGDDA--------EWEELRL 136
Query: 433 DRMLVDYFLRXGYYEXAWKLAESAG 507
R+LVDY LR YY+ A LAE++G
Sbjct: 137 KRILVDYMLRMSYYDTAANLAETSG 161
>12_02_0030 +
12469707-12469902,12470337-12470658,12472208-12472245,
12472486-12473573
Length = 547
Score = 31.5 bits (68), Expect = 0.43
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 192 KWKRSRTNPSQIQRSIVYWVAGREVDNDEAKSERGY*RGAPGR---LRLXEASGTPEGAG 362
KWK T S R I WV R +DEA+ ER GA GR +R E G+ G
Sbjct: 47 KWKVHTTKRSSGTRRIS-WVGERRQRSDEARPERRRQEGAGGRGAGVRRVEGGGS-GAVG 104
Query: 363 QRPRRXVL 386
+ R VL
Sbjct: 105 EGARAAVL 112
>07_03_1647 +
28370226-28370369,28370452-28370611,28370704-28370831,
28372512-28372628,28372729-28372782,28372985-28373075,
28373517-28373688,28374452-28374573,28374726-28374817,
28375331-28375373,28375596-28375656,28376367-28376515,
28376659-28376729,28376805-28376975,28377056-28377124,
28377427-28377528,28377629-28377697,28378060-28378138,
28378238-28378337,28378438-28378513,28378715-28378894,
28379430-28379552,28379634-28379717,28380068-28380252,
28380339-28380477,28380585-28380644,28380926-28381030,
28381332-28381445
Length = 1019
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -2
Query: 502 RTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGRWPAPSGVPDA 335
R A+KR S+ + S PA+D A A + SS+P R+ +R + A G P A
Sbjct: 5 RRSAAAKRRASSEEAAS--PATDGAAAGAGAAGSSTPRRRSGKRAKAEATVGTPAA 58
>05_01_0074 + 506803-507963
Length = 386
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -2
Query: 487 SKRTRSNRSSGSSQP----ASDRDALYAIGSASSSPAWR 383
S + S SS S+P ASDR A+++ GS S S +WR
Sbjct: 336 SHSSNSQASSSHSRPELNDASDRSAVFSHGSRSRSTSWR 374
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 514 SLGRRTPPA-SKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRG 368
S+G +PP S ++ R+S + + AS + Y+ SAS++ A RRG
Sbjct: 26 SVGPSSPPQDSLAAQAMRASAAHRDASSLSSAYSSSSASAAAAAAAARRG 75
>08_02_0879 + 22183052-22183340,22183802-22183949,22184017-22184044
Length = 154
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 463 SSGSSQPASDRDALYAIGSASSSPAWRTXRRGRWPAPSGVPDAS 332
SS S PAS D+ +A + +WR RR A P+A+
Sbjct: 80 SSVPSSPASAPDSPFASATTPKGDSWRRLRRKPKTATDAAPEAA 123
>11_01_0600 -
4780579-4780839,4781256-4781324,4781535-4781598,
4781791-4781919,4782234-4782541
Length = 276
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 505 RRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGRWPA-PSG 347
RR P R S ++ S+ PAS AL G A S R RW + P+G
Sbjct: 215 RRRQPRPSRRSSAAAAASAPPASASSALLPWGPALSHLREVDWERSRWDSIPTG 268
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = -2
Query: 502 RTPPASKRTRSNRSSGSSQPASDRDALYAI------GSASSSPAWRTXRRGRWPAPSGVP 341
RT AS T S S S+ P ++ A+ ++SSS W T WP P+ +P
Sbjct: 8 RTTSASSSTLSTDSPNSAPPGGVPQSITALLNNPLPSASSSSYYWLT-----WPPPTPLP 62
Query: 340 DA 335
DA
Sbjct: 63 DA 64
>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
Length = 351
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = -2
Query: 517 SSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGRWPAPSGVPD 338
S+ R PPA +N S+ PAS R A + ASS R W A S
Sbjct: 112 SASARSPPPARPPPATNTSAEERFPASPRAARKDLSEASSGA--EEERSAAWEASSSTSQ 169
Query: 337 A 335
A
Sbjct: 170 A 170
>01_06_0499 +
29823578-29823754,29823882-29824002,29825103-29825227,
29825338-29825432,29825890-29825994,29826103-29826899,
29827100-29827154,29827930-29828035,29828126-29828268,
29828816-29829038
Length = 648
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -2
Query: 517 SSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGR--WP 359
S+ R TPPA S +PA+ A ASS P R R+ + WP
Sbjct: 8 SASARATPPARSLPPLGASGSQQEPAATASHHAAGAGASSRPMRRKGRKQKQLWP 62
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 487 SKRTRSNRSSGSSQPASDRDALYAIGSASSS 395
SKR RSNRS S P +D + + I +A S
Sbjct: 679 SKRKRSNRSPVGSAPKNDNKSRHGIQAADVS 709
>06_01_1183 + 10157813-10159909
Length = 698
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 261 LDLPPNRLSISVFVMGWFLTVSISVAA 181
+D PP RL ++V + LTVS S AA
Sbjct: 1 MDAPPLRLRLAVAFLSLLLTVSASAAA 27
>06_01_0389 +
2779790-2779891,2780378-2781912,2782087-2782135,
2782620-2782683,2782755-2782843
Length = 612
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 232 LCICDGLVLDRFHFCGGTANLTRLNIEDALSTAVLLVKHFIRHLQCRMLHRFDLI 68
LC L LD CGG +L N +D ++ + R L +H DL+
Sbjct: 205 LCKASWLHLDGVAVCGGLESLYMKNCQDLTDASLAAIGRGCRRLAKFGIHGCDLV 259
>02_04_0109 + 19812544-19814474,19814574-19814607
Length = 654
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 502 RTPPAS-KRTRSNRSSGSSQPASDRDALYAIGSASSSPA 389
+TP S KR+RS RS GSS +SDR ++ S S A
Sbjct: 368 QTPKESRKRSRSKRSRGSSL-SSDRSTSHSTSKCSRSRA 405
>02_01_0507 -
3682383-3682703,3682830-3682970,3683071-3683147,
3683835-3683901
Length = 201
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 324 RLXEASGTPEGAGQRP-RRXVLHAGEDD 404
R A+G + QRP RR LHAG+DD
Sbjct: 94 RTVPAAGIGSHSHQRPHRRQALHAGDDD 121
>11_03_0078 - 9662677-9663642,9666589-9666747
Length = 374
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 523 LVSSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPA 389
+ ++L R P S TRS ++GS + + R ++ +GS+SSS A
Sbjct: 9 VAATLHPRPPSDSGGTRS-AAAGSGRDENRRRRIWPVGSSSSSAA 52
>10_01_0129 + 1535823-1537196
Length = 457
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 490 ASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGRWPAPSGVP 341
+S+R R + SS +S P R P R RRG P+PS VP
Sbjct: 38 SSRRPRPSGSSPTSSPGQIRSP--PDDGDGQPPPPRRRRRGEPPSPSPVP 85
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 409 SASSSPAWRTXRRGRWP 359
S S+SPAWRT RR P
Sbjct: 722 STSASPAWRTGRRTAMP 738
>01_01_1100 +
8716853-8716860,8717739-8717844,8717931-8718015,
8718632-8718715,8718969-8719073,8719621-8719898
Length = 221
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -2
Query: 505 RRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPA 389
+++ +SK+TRS +SGS +S A ++G S+ PA
Sbjct: 126 KKSAGSSKKTRSRFTSGSKNRSSQGSA-QSLGQQSAEPA 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,952
Number of Sequences: 37544
Number of extensions: 259085
Number of successful extensions: 1018
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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