Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060154.seq
(527 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12293| Best HMM Match : OATP (HMM E-Value=0) 64 9e-11
SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_7146| Best HMM Match : Pox_A_type_inc (HMM E-Value=2.7) 30 1.0
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) 30 1.4
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 28 4.1
SB_57156| Best HMM Match : DUF1456 (HMM E-Value=4.9) 28 5.5
SB_14639| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
Length = 1446
Score = 63.7 bits (148), Expect = 9e-11
Identities = 35/82 (42%), Positives = 48/82 (58%)
Frame = +1
Query: 259 EKLTTMKRKASEAINEELQVAYVCXKRLEHLKEQASALAXPSSTQVKTTLNQWRKVRLDR 438
+K+ +KRK+ E I +E C RL+H+KE A K+ + W+K RLDR
Sbjct: 1207 QKIQVLKRKSEEYIGQEDVCVKHCRARLDHIKEHADPR--------KSAMVVWKKKRLDR 1258
Query: 439 MLVDYFLRXGYYEXAWKLAESA 504
MLVD+ LR G+YE A KLA+ A
Sbjct: 1259 MLVDHCLRLGFYETAKKLAQDA 1280
Score = 60.5 bits (140), Expect = 8e-10
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +2
Query: 65 MNEIKSMEHATLKVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNT-EIDS 241
M +IK++E++TLKVPYEV NKK+RSAQ+V D E V A E+ + ++P T E+
Sbjct: 1141 MADIKALEYSTLKVPYEVLNKKFRSAQKVIDREVSYVVGATNELTSTLSKPAVKTGEVTR 1200
Query: 242 LL 247
+L
Sbjct: 1201 ML 1202
>SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.1 bits (67), Expect = 0.59
Identities = 21/84 (25%), Positives = 41/84 (48%)
Frame = +3
Query: 126 RSTAVLNASSMLRRVRLAVPPQKWKRSRTNPSQIQRSIVYWVAGREVDNDEAKSERGY*R 305
R ++++A + RR+RLA+ ++ K +RT+ QR+ + +E + + ER +
Sbjct: 6 RFRSLVSAIKIARRIRLAIFSRRLKFARTSVQNRQRNQAEYSERKERKVRKVRKERKVRK 65
Query: 306 GAPGRLRLXEASGTPEGAGQRPRR 377
G R G E G++ R+
Sbjct: 66 GRKVRKGRKVRKGRKERKGRKVRK 89
>SB_7146| Best HMM Match : Pox_A_type_inc (HMM E-Value=2.7)
Length = 467
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 394 VKTTLNQWRKVRLDRML--VDYFLRXGYYEXAWKLAESA 504
+ T++ ++ K +R L +D L G YE +WK ESA
Sbjct: 366 IMTSMEEYEKPLFERKLAKIDEVLHQGLYEYSWKTLESA 404
>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
Length = 1086
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 517 SSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPA 389
S L + P S R + ++ GSS S R A A GSAS+ PA
Sbjct: 573 SKLKAASKPVSDRGLAGQNDGSSVRRSKRVAAKAQGSASNGPA 615
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 517 SSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSS 395
SS PPAS + S+ SS SS +S + + S+SSS
Sbjct: 575 SSSSSSPPPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 615
>SB_57156| Best HMM Match : DUF1456 (HMM E-Value=4.9)
Length = 501
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 259 EKLTTMKRKASEAINEELQVAYVC 330
E+L T++RKA E + E +V Y C
Sbjct: 478 EQLLTLRRKALEIVKEACEVQYKC 501
>SB_14639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +2
Query: 62 KMNEIKSMEHATLKVPYEVFNKKYRSAQRVFDVEARQVSSAATEMETVKNQPITNTEIDS 241
K+N + S + + N+ Y SA D + Q + A M K QP+ NT +DS
Sbjct: 234 KLNAVSSKKPVNGNKVSPLSNQVYSSA----DDKELQSTGAGAFMHAPKEQPLLNTSVDS 289
Query: 242 LLG 250
G
Sbjct: 290 EKG 292
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 517 SSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGRWPAPSGVPD 338
S+ T A +TR ++S + +PA+ ++ + + GS +S + R RGR P+ P
Sbjct: 687 STSAANTTTAPTQTRQKKTS-AGKPAAGKNPIDSKGSPTSEKSSRPATRGR-PSTGRKPS 744
Query: 337 A 335
A
Sbjct: 745 A 745
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -2
Query: 505 RRTPPASKRTRSNRSSGSSQPASDRDALYAIGS-ASSSPAWRTXRRGRWPAPSG 347
R PPASKRT + + + S G SS P + RGR P G
Sbjct: 380 RAPPPASKRTPTGEGHRAEEARSAERGRRREGERGSSGPRTPSPDRGRQRTPEG 433
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,941
Number of Sequences: 59808
Number of extensions: 276801
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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