Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060154.seq
(527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75551-3|CAA99936.2| 547|Caenorhabditis elegans Hypothetical pr... 31 0.51
U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical pr... 31 0.67
AF045644-2|AAC02600.1| 454|Caenorhabditis elegans Hypothetical ... 30 0.89
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical pr... 29 2.1
CU457741-13|CAM36354.1| 608|Caenorhabditis elegans Hypothetical... 28 3.6
CU457741-11|CAM36352.1| 609|Caenorhabditis elegans Hypothetical... 28 3.6
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 28 3.6
AF068201-1|AAC70927.1| 609|Caenorhabditis elegans aminopeptidas... 28 3.6
AF068200-1|AAC72891.1| 609|Caenorhabditis elegans aminopeptidas... 28 3.6
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 28 4.8
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 28 4.8
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 6.3
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 6.3
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 6.3
Z98866-22|CAE18019.1| 162|Caenorhabditis elegans Hypothetical p... 27 8.3
Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical pr... 27 8.3
>Z75551-3|CAA99936.2| 547|Caenorhabditis elegans Hypothetical
protein W04D2.6b protein.
Length = 547
Score = 31.1 bits (67), Expect = 0.51
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = -2
Query: 505 RRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGR 365
+ P ASKR+R +RSS +S SD + + S SS RT +R R
Sbjct: 86 KNRPEASKRSRRSRSSSNSSSESDSSSSRS-SSYSSRSRSRTPQRSR 131
>U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical
protein C02H7.1 protein.
Length = 535
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 124 QEVPQCSTRLRC*GASG*QCRHRNGNGQEPTHHKYRDR*SIGWQVEKLTTMKRKASEAIN 303
++ + + L+ G + RNG G+E K + G + EK TT KR + + +
Sbjct: 93 KDAEETNKMLQMLGTNATSFNSRNGTGEEKKKKKVKKEDKKGDEEEKSTTKKRSSKKETH 152
Query: 304 EE 309
EE
Sbjct: 153 EE 154
>AF045644-2|AAC02600.1| 454|Caenorhabditis elegans Hypothetical
protein F57H12.4 protein.
Length = 454
Score = 30.3 bits (65), Expect = 0.89
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -3
Query: 348 VFQTLLADVS--DLELLVNSLARF-SLHRCQLLDLPPNRLSISVFVMGWFLTVSISVAAL 178
+ LL +S D+ LL +S+ + S+H+C + RL+ SV W +TVSI +L
Sbjct: 85 IMMVLLCGLSLFDVVLLTSSIMIYPSMHQCSTIHETEQRLNSSVCHFFWRVTVSIFPLSL 144
Query: 177 L 175
+
Sbjct: 145 I 145
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 493 PASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGR 365
P SKR+R +RSS +S SD + + S SS RT +R R
Sbjct: 248 PRSKRSRRSRSSSNSSSESDSSSSRS-SSYSSRSRSRTPQRSR 289
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 493 PASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGR 365
P SKR+R +RSS +S SD + + S SS RT +R R
Sbjct: 248 PRSKRSRRSRSSSNSSSESDSSSSRS-SSYSSRSRSRTPQRSR 289
>Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical
protein C25G4.4 protein.
Length = 424
Score = 29.1 bits (62), Expect = 2.1
Identities = 29/101 (28%), Positives = 46/101 (45%)
Frame = +3
Query: 102 RCRMKCLTRSTAVLNASSMLRRVRLAVPPQKWKRSRTNPSQIQRSIVYWVAGREVDNDEA 281
RC KC +R+ +NA S + +K KR+ + Q++ I +AG+E DND+
Sbjct: 157 RCSGKCQSRN--YVNAPS-----EEVLQARKSKRT-SEAGQLKYEIENEMAGKEADNDD- 207
Query: 282 KSERGY*RGAPGRLRLXEASGTPEGAGQRPRRXVLHAGEDD 404
R +A G P G+ +PR+ V +DD
Sbjct: 208 -----------NRKSAKKARGRPRGSVNKPRQMVKMEPQDD 237
>CU457741-13|CAM36354.1| 608|Caenorhabditis elegans Hypothetical
protein C42C1.11c protein.
Length = 608
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 314 WSSSLIASLAFRFIVVNFSTCHPIDYRSLY 225
WS + ASLAF V C PI YRSL+
Sbjct: 547 WSPIVDASLAFALAVGRMKYCKPI-YRSLF 575
>CU457741-11|CAM36352.1| 609|Caenorhabditis elegans Hypothetical
protein C42C1.11a protein.
Length = 609
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 314 WSSSLIASLAFRFIVVNFSTCHPIDYRSLY 225
WS + ASLAF V C PI YRSL+
Sbjct: 548 WSPIVDASLAFALAVGRMKYCKPI-YRSLF 576
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -2
Query: 505 RRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGRWPAPSGVPD 338
RR+PP +R RS G ++ S + Y SASS R R PA S + D
Sbjct: 67 RRSPPRVRREPPMRSPGRNEVMSP-ERRYGTRSASSRSQNECSCRNRAPARSPIHD 121
>AF068201-1|AAC70927.1| 609|Caenorhabditis elegans aminopeptidase-1
protein.
Length = 609
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 314 WSSSLIASLAFRFIVVNFSTCHPIDYRSLY 225
WS + ASLAF V C PI YRSL+
Sbjct: 548 WSPIVDASLAFALAVGRMKYCKPI-YRSLF 576
>AF068200-1|AAC72891.1| 609|Caenorhabditis elegans aminopeptidase-1
protein.
Length = 609
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -1
Query: 314 WSSSLIASLAFRFIVVNFSTCHPIDYRSLY 225
WS + ASLAF V C PI YRSL+
Sbjct: 548 WSPIVDASLAFALAVGRMKYCKPI-YRSLF 576
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 523 LVSSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAI 413
LV R+ P + R + + SSG QPAS+ + + I
Sbjct: 923 LVCGQRRKVTPFTPRRKQDSSSGDEQPASESTSAFDI 959
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 523 LVSSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAI 413
LV R+ P + R + + SSG QPAS+ + + I
Sbjct: 923 LVCGQRRKVTPFTPRRKQDSSSGDEQPASESTSAFDI 959
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 496 PPASKRTRSNRSSGSSQP-ASDRDALYAIGSASSSP 392
PPAS R+ +++ S S+QP AS GS+S P
Sbjct: 723 PPASSRSTASQGSSSAQPIASSSTMGSTAGSSSPQP 758
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 247 GWQVEKLTTMKRKASEAINEELQVAYVCXKRLEHLKEQASALA 375
GW + +K +A NE +A+ C K+ E+ E+ + +A
Sbjct: 663 GWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTSEKEAPVA 705
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 247 GWQVEKLTTMKRKASEAINEELQVAYVCXKRLEHLKEQASALA 375
GW + +K +A NE +A+ C K+ E+ E+ + +A
Sbjct: 566 GWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTSEKEAPVA 608
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 247 GWQVEKLTTMKRKASEAINEELQVAYVCXKRLEHLKEQASALA 375
GW + +K +A NE +A+ C K+ E+ E+ + +A
Sbjct: 577 GWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTSEKEAPVA 619
>Z98866-22|CAE18019.1| 162|Caenorhabditis elegans Hypothetical
protein Y49E10.27 protein.
Length = 162
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 127 LVKHF--IRHLQCRMLHRFDLIHFENDI 50
++KH+ HL C HRF+++ FE+ +
Sbjct: 76 ILKHYGECYHLDCMECHRFNMVVFEHSV 103
>Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical
protein F47H4.1 protein.
Length = 250
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 526 TLVSSLGRRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSP 392
+L+ S + TPP K R GS P+S + AS SP
Sbjct: 124 SLIQSTIQGTPPVVKTGRKRPMGGSLSPSSSVSTSISSRDASGSP 168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,109,955
Number of Sequences: 27780
Number of extensions: 208137
Number of successful extensions: 805
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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