Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060154.seq
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.8  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 311 SSSLIASLAFRFIVVNFSTCHPIDYRSLY 225
           + SLIA+ AF F +  F T       +LY
Sbjct: 290 TDSLIAAQAFVFFLAGFETSSTTMSNALY 318


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 85  HRFDLIHFENDIRLSGLMIA 26
           HR     F+ND+R S L +A
Sbjct: 225 HRLTSKTFDNDLRYSELAVA 244


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 29  NHQPAQTNIVFKMNEIKS 82
           +H P QT + FK+++ K+
Sbjct: 343 DHAPKQTEVRFKVHDPKA 360


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 29  NHQPAQTNIVFKMNEIKS 82
           +H P QT + FK+++ K+
Sbjct: 343 DHAPKQTEVRFKVHDPKA 360


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -2

Query: 268 STSRPATQ*TIDLCICDGLVLDRFHFCGGTANLTRLNIEDALSTAVLL 125
           + ++P T+ +  +      + D  HFC     +   N E AL TA+++
Sbjct: 437 ANNQPYTKDSYTVAGMGETIEDLLHFCRQMYAMKVNNAEYALLTAIVI 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,433
Number of Sequences: 438
Number of extensions: 2297
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)