Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060154.seq
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55070.1 68416.m06116 expressed protein                             50   7e-07
At3g17530.1 68416.m02239 F-box family protein contains Pfam prof...    30   0.84 
At2g41850.1 68415.m05172 endo-polygalacturonase, putative simila...    30   1.1  
At2g44730.1 68415.m05565 expressed protein similar to 6b-interac...    29   1.5  
At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    29   2.6  
At1g17210.1 68414.m02097 expressed protein distantly related to ...    29   2.6  
At3g26820.1 68416.m03355 esterase/lipase/thioesterase family pro...    28   3.4  
At1g61040.1 68414.m06872 plus-3 domain-containing protein contai...    28   4.5  
At1g19025.1 68414.m02368 DNA cross-link repair protein-related c...    27   5.9  
At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    27   7.8  
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu...    27   7.8  

>At3g55070.1 68416.m06116 expressed protein
          Length = 418

 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 31/83 (37%), Positives = 43/83 (51%)
 Frame = +1

Query: 256 VEKLTTMKRKASEAINEELQVAYVCXKRLEHLKEQASALAXPSSTQVKTTLNQWRKVRLD 435
           V +L  +KRK  E  N E   A  C  R++HL           S  V+  + +W   +L 
Sbjct: 98  VTRLQGLKRKLEEGSNVENLQAQRCRARIDHL----------DSVDVEN-ITEWNNTKLK 146

Query: 436 RMLVDYFLRXGYYEXAWKLAESA 504
           R+LVDY LR  Y+E A KL+ES+
Sbjct: 147 RILVDYMLRMSYFETATKLSESS 169



 Score = 30.7 bits (66), Expect = 0.63
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 62  KMNEIKSMEHATLKVPYEVFNKKYRSAQRVFDVEARQVSSAATEM 196
           +  E   +EH  L+VP+E + K  R+  R F+ E   + +   E+
Sbjct: 36  QFTESLKLEHQLLRVPFEHYKKTIRTNHRSFEKEVSTIVNGVGEL 80


>At3g17530.1 68416.m02239 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 388

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 129 FLLNTSYGTFNVACSIDLISFIL 61
           FLL   YG FN+ C +++ SF+L
Sbjct: 293 FLLTVDYGKFNLPCLVNVTSFLL 315


>At2g41850.1 68415.m05172 endo-polygalacturonase, putative similar
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824; contains PF00295: Glycosyl hydrolases family
           28 (polygalacturonases)
          Length = 433

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 223 CDGLVLDRFHFCGGTANLTRLNIED 149
           C G+VLDR +  GG A  T  N+ D
Sbjct: 398 CQGIVLDRVNIKGGKATCTNANVVD 422


>At2g44730.1 68415.m05565 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 372

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 348 PEGAGQRPRRXVLHAGEDDAEPMA*SAS 431
           PEG G+R R  ++   EDD +PM   AS
Sbjct: 276 PEGGGKRGREMMMKTEEDDNDPMVEIAS 303


>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
            repair and meiosis protein Rad9 [Coprinus cinereus]
            GI:1353390, SP|Q09725 Sister chromatid cohesion protein
            mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 198  KRSRTNPSQIQRSIVYWVAGREVDNDEAKSERGY*RGAPGR 320
            KR R  P +  RS    VA  E D+D+   +RG+  G  GR
Sbjct: 1700 KRKRPTPRKTSRSAKKTVAYNEDDDDDDNDDRGW-HGGGGR 1739


>At1g17210.1 68414.m02097 expressed protein distantly related to
           dentin phosphoryn [Homo sapiens] (GI:4322670)
          Length = 958

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 463 SSGSSQPASDRDALY-AIGSASSSPAWRTXRRGRWPAPSGVPDAS 332
           SS +  P S+R+++  A  SAS++P  R  RR R P+P     AS
Sbjct: 7   SSQNVNPRSNRNSVASASASASATPVDRFRRRARSPSPPQTAAAS 51


>At3g26820.1 68416.m03355 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 634

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 505 RRTPPASKRTRSNRSSGSSQPASDRDALYAIGSASSSPAWRTXRRGRWPAPS 350
           RRT  + +R    +S  S+ P   R+A   +G     P W +    R  AP+
Sbjct: 35  RRTSASKQRLTEIKSVTSTPPPPSREARDFVGDGGGPPRWFSPLECRAQAPN 86


>At1g61040.1 68414.m06872 plus-3 domain-containing protein contains
           Pfam profile PF03126: Plus-3 domain
          Length = 643

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 517 SSLGR-RTPPASKRTRSNRSSGS--SQPASDRDALYAIGSASSS 395
           +S GR R PP+S+R   + S GS  S+  SD D  YA    S S
Sbjct: 16  NSAGRSRHPPSSRRREGSYSDGSSDSRDDSDEDRGYASRKPSGS 59


>At1g19025.1 68414.m02368 DNA cross-link repair protein-related
           contains weak similarity to Swiss-Prot:P30620 DNA
           cross-LINK repair protein PSO2/SNM1 [Saccharomyces
           cerevisiae]
          Length = 549

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 277 KRKASEAINEELQVAYVCXKRLEHLKEQASALAXPSSTQVKTTLNQWRKVRLDRMLVDYF 456
           K + SEA+ +E  + +VC        E  SA+   S   V +T+   R + L+ +  + F
Sbjct: 301 KVRFSEAVKDEFGLWHVCYSMHSSRAELESAMQLLSPKWVVSTVPSCRAMELNYVKKNCF 360

Query: 457 L-RXGYYEXAWKLAE 498
           + R    +  WKL +
Sbjct: 361 ISRFSPDDPFWKLLD 375


>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 253 QVEKLTTMKRKASEAINEELQVAYVCXKRLEHLKE 357
           +VEK+ T++ +  E  N  L+ A+   K++EH+++
Sbjct: 388 EVEKVETLRSRLKEEENCFLEKAFEGRKKMEHIED 422


>At4g38180.1 68417.m05390 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family and PF04434:
           SWIM zinc finger
          Length = 788

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 262 KLTTMKRKASEAINEELQVAYVCXKRLEHLKEQASALAXPSSTQVKTTL 408
           +  T++ KAS  + E  +  Y C   +  L+E A  ++   + +V+ T+
Sbjct: 657 RYNTLRHKASNFVQEAGKSLYTCDVAVVALQEAAKTVSLAMNKEVRRTM 705


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,466,915
Number of Sequences: 28952
Number of extensions: 188662
Number of successful extensions: 610
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)