Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060152.seq
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    32   0.067
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   1.5  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    27   1.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.5  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    27   2.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   3.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.4  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    26   4.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   5.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.9  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   7.7  

>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 31.9 bits (69), Expect = 0.067
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -1

Query: 526 PLRWLSLAPARPGPLHNRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRP 368
           P+R L++ P    P  + SA P+ P P ++ SA PA+P       AS A P P
Sbjct: 41  PVRGLTIPPP---PSVDHSAPPSGPPPSYSNSAAPATPA----ASASSAAPAP 86



 Score = 25.0 bits (52), Expect = 7.7
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -1

Query: 544 PPLVRGPLRWLSLAPARPGPLHNRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATP 374
           PP    P    S APA P    + +A    P    NR+ G A+P     +G  P  P
Sbjct: 58  PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYG-AAPQPYPPQGGYPQQP 113


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 514 LSLAPARPGPLHNRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRP 368
           ++L P  P P     A PA PG +   +A P +PG  +   +S     P
Sbjct: 529 MALPPGMPAPFPGYPAVPAMPG-IPGATAPPGAPGSYNTSESSNLNAPP 576


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 242 GEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRAS 391
           G P D     V+PP +    G E  + +  ASVP P+ +L+    SS +S
Sbjct: 159 GVPLDANNVFVIPPYLTAMKGFEKSQTNATASVPEPS-FLKKSKESSSSS 207


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 28/102 (27%), Positives = 35/102 (34%)
 Frame = +2

Query: 230 RSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEX 409
           R PT  P  P    + PP     P      P + +S+P PA      P  S  S P +  
Sbjct: 138 RPPTSAPPRPS---IPPPSPASAPPIPSKAPPIPSSLPPPA--QPAAPVKSPPSAPSL-- 190

Query: 410 PGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRAPD 535
           P       P +  P LS A  PV            P   AP+
Sbjct: 191 PSAVPPMPPKVPPPPLSQA--PVANTSSRPSSFAPPAGHAPN 230


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +3

Query: 369 GLGVAGLAPRSWSXPGLAGPALRLWSGPGLAGPALRLWSGPGLA 500
           GL VA  APR+WS     G  L +  G G   P    W    +A
Sbjct: 424 GLAVANYAPRAWSR---YGGLLMIGFGLGPTVPICMAWCSASMA 464


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
 Frame = +2

Query: 278 PPKVGKHPGSEFWRPDLDAS----VPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVME 445
           PP +   PG     P +       +P P ++ +  PG      P+   PG      P+  
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE--PGEHMPPPPMHHEPGEHMPPPPMHH 279

Query: 446 RPGLSGASTPVMERPG 493
            PG      P+   PG
Sbjct: 280 EPGEHMPPPPMHHEPG 295



 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
 Frame = +2

Query: 278 PPKVGKHPGSEFWRPDLDAS----VPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVME 445
           PP +   PG     P +       +P P ++ +  PG      P+   PG      P+  
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE--PGEHMPPPPMHHEPGEHMPPPPMHH 292

Query: 446 RPGLSGASTPVMERPG 493
            PG      P+   PG
Sbjct: 293 EPGEHMPPPPMHHEPG 308



 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
 Frame = +2

Query: 278 PPKVGKHPGSEFWRPDLDAS----VPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVME 445
           PP +   PG     P +       +P P ++ +  PG      P+   PG      P+  
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE--PGEHMPPPPMHHEPGEHMPPPPMHH 305

Query: 446 RPGLSGASTPVMERPG 493
            PG      P+   PG
Sbjct: 306 EPGEHMPPPPMHHEPG 321



 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
 Frame = +2

Query: 278 PPKVGKHPGSEFWRPDLDAS----VPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVME 445
           PP +   PG     P +       +P P ++ +  PG      P+   PG      P+  
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE--PGEHMPPPPMHHEPGEHMPPPPMHH 318

Query: 446 RPGLSGASTPVMERPG 493
            PG      P+   PG
Sbjct: 319 EPGEHMPPPPMHHEPG 334



 Score = 25.8 bits (54), Expect = 4.4
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
 Frame = +2

Query: 278 PPKVGKHPGSEFWRPDLDAS----VPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVME 445
           PP +   PG     P +       +P P ++ +  PG      P+   PG      P+  
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHE--PGEHMPPPPMHHEPGEHMPPPPMHH 266

Query: 446 RPGLSGASTPVMERPG 493
            PG      P+   PG
Sbjct: 267 EPGEHMPPPPMHHEPG 282



 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/42 (23%), Positives = 16/42 (38%)
 Frame = -1

Query: 493 PGPLHNRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRP 368
           P P+H++      P P+H+       P  +H        P P
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 17/71 (23%), Positives = 26/71 (36%)
 Frame = +2

Query: 335  SVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQ 514
            + PS A      PG+S A    M    +     P      ++ ++  +   P P  G+T 
Sbjct: 876  AAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETY 935

Query: 515  PPKRAPD*RGP 547
             P  A   R P
Sbjct: 936  HPPTASGTRVP 946


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 323 DLDASVPSPALYLQCGPGSSRASTPV 400
           D D+++P+P++       SSRAS+PV
Sbjct: 137 DSDSALPTPSVTTNEAADSSRASSPV 162


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 413 GTSGASTPVMERP--GLSGASTPVMERPGPSGGQT 511
           G +    PV  RP  G  GA+ P   +PG  GG +
Sbjct: 322 GNNTNGRPVAPRPSAGAGGANPPAASQPGLLGGSS 356


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 27/119 (22%), Positives = 38/119 (31%), Gaps = 1/119 (0%)
 Frame = +2

Query: 164  SPSSPAFGL*STSIEAH*RVAARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVP 343
            SPSSP +      + +    +  SP+  PT P  +   P      P      P    + P
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP 1618

Query: 344  SPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGAST-PVMERPGPSGGQTQP 517
            S   Y    P  S  S        +   ++P       S + T P      PS   T P
Sbjct: 1619 S---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +2

Query: 326  LDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGG 505
            + A  PS A + Q  P  S  +TP ++   T   ++PV +      +ST + +     G 
Sbjct: 882  IHAPTPSTATF-QGHPTISNVATPPLKQDVTESKASPVADASATHQSSTGLTQEITQLGS 940

Query: 506  QTQPPKR--APD*RGPATSGHR 565
              + P +   P   G   SG R
Sbjct: 941  NMRLPTKLTRPSNDGRKASGPR 962


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 344 SPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMER 487
           SP  +    PGS+R +TP      T  AS+P++      G + P   R
Sbjct: 30  SPLFFPASSPGSTRLTTP-RTTARTPLASSPLLFESSSPGPNIPQSSR 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,069
Number of Sequences: 5004
Number of extensions: 44923
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)