Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060152.seq
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 41 7e-04
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 34 0.082
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 33 0.19
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 33 0.19
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 33 0.19
AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein. 33 0.19
AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical ... 33 0.19
AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical ... 32 0.33
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 31 0.44
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 31 0.58
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 31 0.58
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 30 1.0
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 30 1.0
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 30 1.0
U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical pr... 30 1.3
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 30 1.3
Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical pr... 29 1.8
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 29 1.8
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 29 1.8
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 29 1.8
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 29 1.8
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 29 1.8
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical pr... 29 2.3
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 29 2.3
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 29 2.3
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 29 2.3
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 2.3
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 2.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 2.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 2.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 2.3
U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 28 4.1
U28928-14|AAL16319.1| 197|Caenorhabditis elegans Hypothetical p... 23 5.2
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 28 5.4
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 28 5.4
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 28 5.4
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 28 5.4
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 28 5.4
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 5.4
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 28 5.4
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 28 5.4
AL033514-25|CAA22109.1| 570|Caenorhabditis elegans Hypothetical... 28 5.4
AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical ... 28 5.4
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 27 7.1
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 7.1
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 27 7.1
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 27 7.1
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 27 7.1
AL032643-6|CAA21657.1| 538|Caenorhabditis elegans Hypothetical ... 27 7.1
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 27 7.1
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 27 7.1
Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 9.4
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 9.4
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 27 9.4
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 27 9.4
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 27 9.4
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 27 9.4
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 27 9.4
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 27 9.4
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 27 9.4
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 27 9.4
AY150815-1|AAN61049.1| 964|Caenorhabditis elegans ADR-1C protein. 27 9.4
AF098986-3|AAC67424.1| 832|Caenorhabditis elegans Hypothetical ... 27 9.4
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 9.4
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 27 9.4
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 40.7 bits (91), Expect = 7e-04
Identities = 39/116 (33%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Frame = +2
Query: 242 GEPTDPKRAR-VLPPKVGKHP------GSEFWRPDLDASVPSPALYLQCGPGSSRASTPV 400
G P P+ +PP G P GS P + S PS + GPG RA P
Sbjct: 213 GAPQVPQAPNSFIPPGTGGFPPGQPTAGSFPPGPQVPGSYPSGPADIPQGPGMPRAFPPG 272
Query: 401 MEXP---GTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRAPD*RGPATSG 559
P G GA P PG+ G+ P PGP GG P AP GP G
Sbjct: 273 ASAPVAPGMPGAFPPGQGGPGMPGSFPP--GAPGP-GGPGMPGSFAPGAPGPGGPG 325
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = -1
Query: 508 LAPARPGPLHNRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRP 368
+AP PG GP PG + GP PG +P P P
Sbjct: 277 VAPGMPGAFPPGQGGPGMPGSFPPGAPGPGGPGM--PGSFAPGAPGP 321
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +3
Query: 369 GLGVAGLAPRSWSXPGLAG-PALRLWSGPGLAGPALRLWSGPGLAGARLSHRSGPRTSGG 545
G G+ G P PG G P PG GP GPG+ G + + GP
Sbjct: 291 GPGMPGSFPPGAPGPGGPGMPGSFAPGAPGPGGPGGYPSGGPGMPGMQGGYPGGPPQQRQ 350
Query: 546 QQL 554
Q+L
Sbjct: 351 QRL 353
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 33.9 bits (74), Expect = 0.082
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -1
Query: 541 PLVRGPLRWLSLAPARPGPLHNRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRPT 365
P+ P ++ PARP P S +P P R+ +P R P T RPT
Sbjct: 213 PVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQPPRTRPYVAPSTTTQRYIEPTTQRPT 271
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 33.5 bits (73), Expect = 0.11
Identities = 29/107 (27%), Positives = 45/107 (42%)
Frame = +2
Query: 248 PTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGA 427
P +PK+ ++PP G + SE + DA P+P + P + TP ++
Sbjct: 184 PAEPKK--IIPPASG-YVTSEQEQGAGDAPEPAPVVEETPAPTPAAEETPAPATEASNAV 240
Query: 428 STPVMERPGLSGASTPVMERPGPSGGQTQPPKRAPD*RGPATSGHRA 568
TP G + A++ V E P+ P A + PATS A
Sbjct: 241 GTPEGYVDGTANAASAVAE---PAVETPAPAPAAEETPAPATSSEEA 284
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 32.7 bits (71), Expect = 0.19
Identities = 42/115 (36%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Frame = +2
Query: 236 PTGEPTDPKRARVLPPKVGKHPGSEFW--RPDLDASVPSPALYLQCGP-GSSRASTPVME 406
P G P P PP PG RP DA+ SP GP G + A P E
Sbjct: 151 PQGPPGPPG-----PPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGE 205
Query: 407 XPGTSGASTPVME-RPGLSGASTPVMERPGPSG--GQTQP-----PKRAPD*RGP 547
PGT S P+ PG G S P PGP G G P PK AP GP
Sbjct: 206 -PGTPAISEPLTPGAPGEPGDSGP-PGPPGPPGAPGNDGPPGPPGPKGAPGPDGP 258
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/92 (31%), Positives = 35/92 (38%)
Frame = +2
Query: 227 ARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVME 406
A P GEP P + L P PG D+ P P GP + +
Sbjct: 199 APGPAGEPGTPAISEPLTPGAPGEPG--------DSGPPGPP-----GPPGAPGNDGPPG 245
Query: 407 XPGTSGASTPVMERPGLSGASTPVMERPGPSG 502
PG GA P PG+ G S P PGP+G
Sbjct: 246 PPGPKGAPGP-DGPPGVDGQSGP-PGPPGPAG 275
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 32.7 bits (71), Expect = 0.19
Identities = 42/115 (36%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Frame = +2
Query: 236 PTGEPTDPKRARVLPPKVGKHPGSEFW--RPDLDASVPSPALYLQCGP-GSSRASTPVME 406
P G P P PP PG RP DA+ SP GP G + A P E
Sbjct: 146 PQGPPGPPG-----PPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGE 200
Query: 407 XPGTSGASTPVME-RPGLSGASTPVMERPGPSG--GQTQP-----PKRAPD*RGP 547
PGT S P+ PG G S P PGP G G P PK AP GP
Sbjct: 201 -PGTPAISEPLTPGAPGEPGDSGP-PGPPGPPGAPGNDGPPGPPGPKGAPGPDGP 253
Score = 29.1 bits (62), Expect = 2.3
Identities = 29/92 (31%), Positives = 34/92 (36%)
Frame = +2
Query: 227 ARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVME 406
A P GEP P + L P PG D+ P P GP + +
Sbjct: 194 APGPAGEPGTPAISEPLTPGAPGEPG--------DSGPPGPP-----GPPGAPGNDGPPG 240
Query: 407 XPGTSGASTPVMERPGLSGASTPVMERPGPSG 502
PG GA P PG G S P PGP+G
Sbjct: 241 PPGPKGAPGP-DGPPGADGQSGP-PGPPGPAG 270
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 32.7 bits (71), Expect = 0.19
Identities = 42/115 (36%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Frame = +2
Query: 236 PTGEPTDPKRARVLPPKVGKHPGSEFW--RPDLDASVPSPALYLQCGP-GSSRASTPVME 406
P G P P PP PG RP DA+ SP GP G + A P E
Sbjct: 146 PQGPPGPPG-----PPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPGPAGEAGAPGPAGE 200
Query: 407 XPGTSGASTPVME-RPGLSGASTPVMERPGPSG--GQTQP-----PKRAPD*RGP 547
PGT S P+ PG G S P PGP G G P PK AP GP
Sbjct: 201 -PGTPAISEPLTPGAPGEPGDSGP-PGPPGPPGAPGNDGPPGPPGPKGAPGPDGP 253
Score = 29.1 bits (62), Expect = 2.3
Identities = 29/92 (31%), Positives = 34/92 (36%)
Frame = +2
Query: 227 ARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVME 406
A P GEP P + L P PG D+ P P GP + +
Sbjct: 194 APGPAGEPGTPAISEPLTPGAPGEPG--------DSGPPGPP-----GPPGAPGNDGPPG 240
Query: 407 XPGTSGASTPVMERPGLSGASTPVMERPGPSG 502
PG GA P PG G S P PGP+G
Sbjct: 241 PPGPKGAPGP-DGPPGADGQSGP-PGPPGPAG 270
>AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +3
Query: 372 LGVAGLAPRSWSXPGLAGPALRLWSGPGLAGPALRLWSGPGLAG 503
+G AGL PGL GP + GPGL GP + GPG G
Sbjct: 40 VGGAGLGGPGIGGPGLGGPGI---GGPGLGGPG--VGGGPGAFG 78
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 369 GLGVAGLAPRSWSXPGLAGPAL---RLWSGPGLAGPALRLWSGPGLAG 503
GLG G+ PG+ GP L + GPG GP R + G G G
Sbjct: 44 GLGGPGIGGPGLGGPGIGGPGLGGPGVGGGPGAFGPYGR-YGGGGYGG 90
>AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical
protein F46E10.2 protein.
Length = 139
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +3
Query: 372 LGVAGLAPRSWSXPGLAGPALRLWSGPGLAGPALRLWSGPGLAG 503
+G AGL PGL GP + GPGL GP + GPG G
Sbjct: 40 VGGAGLGGPGIGGPGLGGPGI---GGPGLGGPG--VGGGPGAFG 78
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 369 GLGVAGLAPRSWSXPGLAGPAL---RLWSGPGLAGPALRLWSGPGLAG 503
GLG G+ PG+ GP L + GPG GP R + G G G
Sbjct: 44 GLGGPGIGGPGLGGPGIGGPGLGGPGVGGGPGAFGPYGR-YGGGGYGG 90
>AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical
protein F56H1.6 protein.
Length = 381
Score = 31.9 bits (69), Expect = 0.33
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -2
Query: 501 PLGPGRSITGVLAPLSPGRSITGVLAPLVPGXSMTGVLARLLPGPHCKYRAGDGTEASR 325
PL PGR T V+ S+ G + L PG + V+ +LPG H ++ D S+
Sbjct: 87 PLIPGRDCTAVV------ESVGGDVHNLAPGDEVMAVVPVILPGTHAEFVVTDSKYCSK 139
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = +2
Query: 368 GPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRAPD*RGP 547
GP S PG G S P A TP + GP+G T P AP GP
Sbjct: 172 GPDGEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPD--GPAGESTYPEPAAPGPAGP 229
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 31.1 bits (67), Expect = 0.58
Identities = 28/118 (23%), Positives = 38/118 (32%)
Frame = +2
Query: 164 SPSSPAFGL*STSIEAH*RVAARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVP 343
SP+SP++ S S + SPT P P P S + P P
Sbjct: 1620 SPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSP 1677
Query: 344 SPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQP 517
+ Y P S S T ++P E G S+P P+ T P
Sbjct: 1678 TSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSP 1735
Score = 31.1 bits (67), Expect = 0.58
Identities = 32/122 (26%), Positives = 40/122 (32%), Gaps = 4/122 (3%)
Frame = +2
Query: 164 SPSSPAFGL*S-TSIEAH*RVAARSPTGEPTDPKRARVLPPKV---GKHPGSEFWRPDLD 331
SPSSP + S T + SPT PT P + P G P S + P
Sbjct: 1669 SPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSP 1728
Query: 332 ASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQT 511
P+ Y P S S T S+P G S+P P+ T
Sbjct: 1729 TYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPT 1788
Query: 512 QP 517
P
Sbjct: 1789 SP 1790
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 31.1 bits (67), Expect = 0.58
Identities = 28/118 (23%), Positives = 38/118 (32%)
Frame = +2
Query: 164 SPSSPAFGL*STSIEAH*RVAARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVP 343
SP+SP++ S S + SPT P P P S + P P
Sbjct: 1627 SPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSP 1684
Query: 344 SPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQP 517
+ Y P S S T ++P E G S+P P+ T P
Sbjct: 1685 TSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSP 1742
Score = 31.1 bits (67), Expect = 0.58
Identities = 32/122 (26%), Positives = 40/122 (32%), Gaps = 4/122 (3%)
Frame = +2
Query: 164 SPSSPAFGL*S-TSIEAH*RVAARSPTGEPTDPKRARVLPPKV---GKHPGSEFWRPDLD 331
SPSSP + S T + SPT PT P + P G P S + P
Sbjct: 1676 SPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSP 1735
Query: 332 ASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQT 511
P+ Y P S S T S+P G S+P P+ T
Sbjct: 1736 TYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPT 1795
Query: 512 QP 517
P
Sbjct: 1796 SP 1797
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/72 (36%), Positives = 33/72 (45%)
Frame = +2
Query: 332 ASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQT 511
AS PSP ++ PG TP + PG G TP P +G+S GP+ GQ
Sbjct: 163 ASFPSPDTSIR--PGGQ--ITPGSQAPG--GGPTPAPNVPFPNGSS---QMNGGPAMGQP 213
Query: 512 QPPKRAPD*RGP 547
P AP+ GP
Sbjct: 214 PPQMGAPNMGGP 225
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/72 (36%), Positives = 33/72 (45%)
Frame = +2
Query: 332 ASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQT 511
AS PSP ++ PG TP + PG G TP P +G+S GP+ GQ
Sbjct: 160 ASFPSPDTSIR--PGGQ--ITPGSQAPG--GGPTPAPNVPFPNGSS---QMNGGPAMGQP 210
Query: 512 QPPKRAPD*RGP 547
P AP+ GP
Sbjct: 211 PPQMGAPNMGGP 222
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +2
Query: 368 GP-GSSRASTPVMEXP-GTSGASTPVMERPGLSGASTPVMERP----GPSGGQTQPPKRA 529
GP G + S P P G +G+S P +PG +G S P + GPS G +
Sbjct: 1351 GPNGPNEPSDPNKPGPNGPNGSSDP--NKPGPNGPSNPSVPESSTGGGPSPGPSPNEPSN 1408
Query: 530 PD*RGPATSG 559
P GP+T G
Sbjct: 1409 PSILGPSTGG 1418
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Frame = +2
Query: 245 EPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSS--RASTPVMEXPGT 418
EP+DP + P P + SVP + PG S S P + P T
Sbjct: 1357 EPSDPNKPGPNGPNGSSDPNKPGPNGPSNPSVPESSTGGGPSPGPSPNEPSNPSILGPST 1416
Query: 419 SGASTP-----VMERPGLSGASTPVMERPGPS-GGQTQP 517
G +P P + G ST PGPS G + P
Sbjct: 1417 GGDPSPGPSPNEPSNPSILGPSTGGDPSPGPSPNGPSNP 1455
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +2
Query: 368 GPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRAPD*RGP 547
GP + S P + P T G +P P +G S P + GG + P APD P
Sbjct: 1423 GPSPNEPSNPSILGPSTGGDPSP---GPSPNGPSNPSVPESSTGGGPSPGP--APD---P 1474
Query: 548 ATS 556
TS
Sbjct: 1475 GTS 1477
>U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical
protein T04C9.1a protein.
Length = 881
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 487 PLHNRSAGPAKPGPLHNRSAGPASPG 410
PL RS G + P P+ +RS P +PG
Sbjct: 617 PLATRSFGTSTPSPITSRSRSPKTPG 642
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Frame = +2
Query: 299 PGSEFWRPDLDASVPSPALYLQCGPGS--SRASTPVMEX-PGTSGASTPVMERPGLSGAS 469
PG E P D + PS + GP + P + PG GA V E PG G +
Sbjct: 179 PGPE-GAPGEDGNTPSRGGVGEAGPPGPPGTSGNPGTDGAPGNPGAPGQVTETPGTPGPA 237
Query: 470 TPVMERPGPSGGQTQPPKRAPD*RGPA 550
PGP G P GPA
Sbjct: 238 -GAAGPPGPPGPAGNPGSAGASEPGPA 263
>Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical
protein F47G4.4 protein.
Length = 722
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 511 SLAPARPGPLHNRSAGPAKPGPLHNRSAGPASPG 410
S +P H+ P KP P+ +RSA PG
Sbjct: 347 SASPVNSSSSHSSPTSPVKPAPVKHRSASQKLPG 380
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +2
Query: 308 EFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMER 487
EF RPD P P +S A+TP+ PG +G M +TP
Sbjct: 174 EFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGGAGPQPMTMPSTSSCQMTTPKWAS 233
Query: 488 PG 493
PG
Sbjct: 234 PG 235
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +2
Query: 308 EFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMER 487
EF RPD P P +S A+TP+ PG +G M +TP
Sbjct: 249 EFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGGAGPQPMTMPSTSSCQMTTPKWAS 308
Query: 488 PG 493
PG
Sbjct: 309 PG 310
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +2
Query: 308 EFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMER 487
EF RPD P P +S A+TP+ PG +G M +TP
Sbjct: 183 EFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGGAGPQPMTMPSTSSCQMTTPKWAS 242
Query: 488 PG 493
PG
Sbjct: 243 PG 244
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +2
Query: 308 EFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMER 487
EF RPD P P +S A+TP+ PG +G M +TP
Sbjct: 327 EFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGGAGPQPMTMPSTSSCQMTTPKWAS 386
Query: 488 PG 493
PG
Sbjct: 387 PG 388
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +2
Query: 308 EFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMER 487
EF RPD P P +S A+TP+ PG +G M +TP
Sbjct: 174 EFQRPDDRLPYYVPVTTNGTLPNASSAATPLSGTPGGAGPQPMTMPSTSSCQMTTPKWAS 233
Query: 488 PG 493
PG
Sbjct: 234 PG 235
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 389 STPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRA 529
ST ++ P S STP M + G S + G SG PP A
Sbjct: 796 STHRIDPPNASLPSTPTMSHKKVIGGSLAKLSASGASGSTGAPPSPA 842
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 389 STPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRA 529
ST ++ P S STP M + G S + G SG PP A
Sbjct: 796 STHRIDPPNASLPSTPTMSHKKVIGGSLAKLSASGASGSTGAPPSPA 842
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 389 STPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRA 529
ST ++ P S STP M + G S + G SG PP A
Sbjct: 312 STHRIDPPNASLPSTPTMSHKKVIGGSLAKLSASGASGSTGAPPSPA 358
>Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical
protein C07G2.2c protein.
Length = 509
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 317 RPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGP 496
+PD A + SP+ P S+ T M P TSGA P L V P
Sbjct: 237 KPDFSALLRSPS---SSAPNSASVLTNAMAIPSTSGAPFP---GTTLLVPPKTVSSYHSP 290
Query: 497 SGGQTQPP 520
G +QPP
Sbjct: 291 LGASSQPP 298
>Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical
protein C07G2.2b protein.
Length = 460
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 317 RPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGP 496
+PD A + SP+ P S+ T M P TSGA P L V P
Sbjct: 188 KPDFSALLRSPS---SSAPNSASVLTNAMAIPSTSGAPFP---GTTLLVPPKTVSSYHSP 241
Query: 497 SGGQTQPP 520
G +QPP
Sbjct: 242 LGASSQPP 249
>Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical
protein C07G2.2a protein.
Length = 457
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = +2
Query: 317 RPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGP 496
+PD A + SP+ P S+ T M P TSGA P L V P
Sbjct: 188 KPDFSALLRSPS---SSAPNSASVLTNAMAIPSTSGAPFP---GTTLLVPPKTVSSYHSP 241
Query: 497 SGGQTQPP 520
G +QPP
Sbjct: 242 LGASSQPP 249
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 29.1 bits (62), Expect = 2.3
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Frame = +2
Query: 236 PTGEPTDPKRA---RVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVME 406
PTG P DP + PP PG + P +P + G GS P +
Sbjct: 142 PTGLPCDPVTVPPCKPCPPGPAGEPGHD-GAPGAPGKPGAPGV----GGGSGAPGAPGPK 196
Query: 407 X-PGTSGASTPVME-RPGLSGASTPVMERPGPSGGQTQPPKRAPD*RGPATSGH 562
PG G P + +PG +G PG G QP R P + + G+
Sbjct: 197 GAPG--GPGQPGRDGQPGQAGQPGSSSSEPGQPGPNGQPGPRGPPGQAGSPGGN 248
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein.
Length = 582
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 389 STPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRA 529
ST ++ P S STP M + G S + G SG PP A
Sbjct: 312 STHRIDPPNASLPSTPTMSHKKVIGGSLAKLSASGASGSTGAPPSPA 358
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 389 STPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRA 529
ST ++ P S STP M + G S + G SG PP A
Sbjct: 796 STHRIDPPNASLPSTPTMSHKKVIGGSLAKLSASGASGSTGAPPSPA 842
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Frame = +2
Query: 281 PKVGKHPGSEFWRP-DLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVME--RP 451
P + PG+ R L P L QCGP TP PGT G + P
Sbjct: 237 PGLKGEPGNNSIRQISLPGRKGPPGLPGQCGPPGPPGYTPPPGPPGTPGVQGEAGQDGEP 296
Query: 452 GLSGASTPVMERPGPSGGQTQ----PPKRA 529
G+ G + R GP G + PPK A
Sbjct: 297 GVPGVTGYPGVR-GPPGQDAEYCPCPPKNA 325
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.1 bits (62), Expect = 2.3
Identities = 27/91 (29%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Frame = +2
Query: 278 PPKVG-KHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPG 454
P K G K P E P P GP + + PG G V+E PG
Sbjct: 194 PGKQGPKGPNGEPGAPGTPGGNALPGPPGPPGPQGPPGADGLPGNPGAPGVPGQVIEVPG 253
Query: 455 LSGASTPVMERPGPSGGQTQPPKRAPD*RGP 547
G + P PGP G QP GP
Sbjct: 254 TPGPAGP-PGPPGPIGPPGQPGAPGSSQPGP 283
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 3/106 (2%)
Frame = +2
Query: 245 EPTDPKRARVL-PPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTS 421
EP P+R+ P G P R P L P + P G+
Sbjct: 403 EPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGL-----PSRQKRQAPEDRPTGSP 457
Query: 422 GASTPVMERP--GLSGASTPVMERPGPSGGQTQPPKRAPD*RGPAT 553
+P RP G G S R GP G + PP +P P T
Sbjct: 458 PTGSPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSPPTGSPPT 503
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 3/106 (2%)
Frame = +2
Query: 245 EPTDPKRARVL-PPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTS 421
EP P+R+ P G P R P L P + P G+
Sbjct: 424 EPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGL-----PSRQKRQAPEDRPTGSP 478
Query: 422 GASTPVMERP--GLSGASTPVMERPGPSGGQTQPPKRAPD*RGPAT 553
+P RP G G S R GP G + PP +P P T
Sbjct: 479 PTGSPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSPPTGSPPT 524
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 3/106 (2%)
Frame = +2
Query: 245 EPTDPKRARVL-PPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTS 421
EP P+R+ P G P R P L P + P G+
Sbjct: 409 EPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGL-----PSRQKRQAPEDRPTGSP 463
Query: 422 GASTPVMERP--GLSGASTPVMERPGPSGGQTQPPKRAPD*RGPAT 553
+P RP G G S R GP G + PP +P P T
Sbjct: 464 PTGSPPTGRPHRGGPGKSESSESREGPRGPRRSPPTGSPPTGSPPT 509
>U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical
protein ZK1290.6 protein.
Length = 507
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 385 G*HPGHGVARD*RGQHSGYGAARA*RGQHSGYG 483
G H GHG + G H G+G+ G HSG+G
Sbjct: 54 GSHGGHGGSHG--GSHGGHGSHGGSYGGHSGHG 84
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +2
Query: 374 GSSRASTPVMEXPGT-SGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRAPD*RGP 547
GSS S P G S+ V R ++ P P P P +RAP + P
Sbjct: 214 GSSSTSAPPKTAAGAPKRLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPSPKAP 272
>U28928-14|AAL16319.1| 197|Caenorhabditis elegans Hypothetical
protein C44B7.1 protein.
Length = 197
Score = 23.4 bits (48), Expect(2) = 5.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 480 WSGPGLAGARLSHRSG 527
WSGPGL G + SG
Sbjct: 179 WSGPGLLGCNIVPISG 194
Score = 23.0 bits (47), Expect(2) = 5.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 387 LAPRSWSXPGLAG 425
+ P+ WS PGL G
Sbjct: 174 ICPKKWSGPGLLG 186
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +2
Query: 368 GPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRAPD*RGP 547
GP S PG G P A TP + GP+G T P P GP
Sbjct: 173 GPDGEAGSPAAPSPPGPPGPPGPAGPAGNDGAAGTPGPD--GPAGESTYPEPAGPGPAGP 230
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 377 SSRASTPVMEXPGTSGA--STPVMERPGLSGASTPVMER-PGPSGGQTQPP 520
S+ + P PG A +P+M + S P M R PGPS G QPP
Sbjct: 111 SNNSPRPQAYPPGQQNAFNRSPMMPNGTPNMMSPPSMGRVPGPSPGGPQPP 161
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 377 SSRASTPVMEXPGTSGA--STPVMERPGLSGASTPVMER-PGPSGGQTQPP 520
S+ + P PG A +P+M + S P M R PGPS G QPP
Sbjct: 111 SNNSPRPQAYPPGQQNAFNRSPMMPNGTPNMMSPPSMGRVPGPSPGGPQPP 161
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 505 APARPGPLHNRSAGPA-KPG-PLHNRSAGPASPGXLHDRGASPATP 374
AP PGP + AGPA PG P + S GP P + SP P
Sbjct: 228 APGAPGP--DGPAGPAGSPGAPGNPGSQGPQGPAGDNGGAGSPGQP 271
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 505 APARPGPLHNRSAGPA-KPG-PLHNRSAGPASPGXLHDRGASPATP 374
AP PGP + AGPA PG P + S GP P + SP P
Sbjct: 290 APGAPGP--DGPAGPAGSPGAPGNPGSQGPQGPAGDNGGAGSPGQP 333
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = -1
Query: 466 GPAKPGPLHNRSAGP-ASPGXLHDRGASP 383
GP PG L R GP PG DRG P
Sbjct: 582 GPGGPGGLGGRGQGPDFGPGGQGDRGQGP 610
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 505 APARPGPLHNRSAGPA-KPG-PLHNRSAGPASPGXLHDRGASPATP 374
AP PGP + AGPA PG P + S GP P + SP P
Sbjct: 227 APGAPGP--DGPAGPAGSPGAPGNPGSQGPQGPAGDNGGAGSPGQP 270
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 505 APARPGPLHNRSAGPA-KPG-PLHNRSAGPASPGXLHDRGASPATP 374
AP PGP + AGPA PG P + S GP P + SP P
Sbjct: 227 APGAPGP--DGPAGPAGSPGAPGNPGSQGPQGPAGDNGGAGSPGQP 270
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 505 APARPGPLHNRSAGPA-KPG-PLHNRSAGPASPGXLHDRGASPATP 374
AP PGP + AGPA PG P + S GP P + SP P
Sbjct: 228 APGAPGP--DGPAGPAGSPGAPGNPGSQGPQGPAGDNGGAGSPGQP 271
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 505 APARPGPLHNRSAGPA-KPG-PLHNRSAGPASPGXLHDRGASPATP 374
AP PGP + AGPA PG P + S GP P + SP P
Sbjct: 228 APGAPGP--DGPAGPAGSPGAPGNPGSQGPQGPAGDNGGAGSPGQP 271
>AL033514-25|CAA22109.1| 570|Caenorhabditis elegans Hypothetical
protein Y75B8A.25 protein.
Length = 570
Score = 27.9 bits (59), Expect = 5.4
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Frame = +2
Query: 242 GEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTS 421
GE ++ VLPP P S D +V P + S P G
Sbjct: 138 GENMASLKSIVLPPPAPTKPAST--PKDAHETVFYPQTHDSFNLDHYNGSRPSFAFAGIH 195
Query: 422 GA-STPVMERPGLSGASTPVMERPGPSGG 505
GA STPV ++P S + E G GG
Sbjct: 196 GATSTPVSKQPPFPLFSEQITEECGGGGG 224
>AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical
protein Y42G9A.4a protein.
Length = 607
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 323 DLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMER 487
++ S+P P L PG+ + PV + STP PG A +P +++
Sbjct: 203 EIALSLPVPPLTPLPSPGAQSTAPPVFPTSTPTPTSTPTPLLPGNLRADSPAVQQ 257
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -1
Query: 502 PARPGPLHNRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRP 368
P PGP + P +PG + SA P PG D GA A +P
Sbjct: 249 PGPPGP----AGAPGQPG--QSGSAQPGGPGPQGDAGAPGAPGQP 287
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Frame = +3
Query: 351 PYIYNVGLGVAGLAPRSWSXPGLAGPALRLWSGP-GLAGPALR------LWSGPGLAGAR 509
P N G G+APR P + GP +++ P GPA R + GP
Sbjct: 516 PMRTNDGRPQYGMAPRPAGAPRVGGPGVQMGGAPIRQQGPAPRGAPQKPFYQGPPRQQQP 575
Query: 510 LSHRSGPRTSGGQQ 551
H P GQQ
Sbjct: 576 QQHSQQPAQQPGQQ 589
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 505 APARPGPLHNRSAGPAKPGPLHNRSAGP 422
AP P P + GP PGP NR P
Sbjct: 803 APGGPRPPYPYPGGPVPPGPPQNRMPPP 830
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -1
Query: 478 NRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRPTL 362
N S A PLHN + ASP TP PTL
Sbjct: 31 NGSVKRAPKRPLHNGVINNVEKSNSSEEPASPTTPPPTL 69
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
defective protein 27,isoform b protein.
Length = 1124
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -1
Query: 478 NRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRPTL 362
N S A PLHN + ASP TP PTL
Sbjct: 543 NGSVKRAPKRPLHNGVINNVEKSNSSEEPASPTTPPPTL 581
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
defective protein 27,isoform a protein.
Length = 1129
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -1
Query: 478 NRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRPTL 362
N S A PLHN + ASP TP PTL
Sbjct: 546 NGSVKRAPKRPLHNGVINNVEKSNSSEEPASPTTPPPTL 584
>AL032643-6|CAA21657.1| 538|Caenorhabditis elegans Hypothetical
protein Y54E5A.4 protein.
Length = 538
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Frame = +2
Query: 374 GSSRASTPVMEXPGTSGASTPVMERP--GLSGASTPVMERPGPSGGQTQPPKRAP 532
GS+ A TP ST P GL GA T P P+GG AP
Sbjct: 61 GSTTAPTPASTSSVPLFGSTTTTASPSGGLFGAKTATTAAPAPTGGLFGASTAAP 115
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -1
Query: 478 NRSAGPAKPGPLHNRSAGPASPGXLHDRGASPATPRPTL 362
N S A PLHN + ASP TP PTL
Sbjct: 546 NGSVKRAPKRPLHNGVINNVEKSNSSEEPASPTTPPPTL 584
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/69 (23%), Positives = 24/69 (34%)
Frame = +2
Query: 350 ALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRA 529
A + + G S+ A S+ V R ++ P P P P +RA
Sbjct: 211 AKHYKIGASSTSAPPKTTAAGAPKRPSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 270
Query: 530 PD*RGPATS 556
P + P S
Sbjct: 271 PSPKAPVAS 279
>Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical
protein H13N06.2 protein.
Length = 454
Score = 27.1 bits (57), Expect = 9.4
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Frame = +2
Query: 305 SEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGAST----PVMERPGLSGAST 472
+E W P +V P + R + P + PGTS +T P P G ST
Sbjct: 31 AERWYPSNLPTVMPPWKLAGVDISNFRTARP-HQSPGTSPVTTTPVAPTNSLPMPPGTST 89
Query: 473 PVMERPGPSGGQTQPPKRAP 532
P + SG PP P
Sbjct: 90 PSLSSAENSGNGPHPPAPPP 109
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = +2
Query: 368 GPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRAPD*RGP 547
GPG+ A V E PG G P PG +G PGP+G Q P GP
Sbjct: 221 GPGNPGAPGAVTEVPGQQGPPGP----PGPAGP-------PGPAGNAGQAGYAQPGPAGP 269
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 9.4
Identities = 24/96 (25%), Positives = 34/96 (35%)
Frame = +2
Query: 224 AARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVM 403
++ P+G T+P + P SE D+ S PG+S + P
Sbjct: 526 SSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFP-S 584
Query: 404 EXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQT 511
P +S +S E P S S PG S T
Sbjct: 585 STPDSSVSS----EEPNASSNSVSTETSPGSSDETT 616
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 9.4
Identities = 24/96 (25%), Positives = 34/96 (35%)
Frame = +2
Query: 224 AARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVM 403
++ P+G T+P + P SE D+ S PG+S + P
Sbjct: 526 SSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFP-S 584
Query: 404 EXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQT 511
P +S +S E P S S PG S T
Sbjct: 585 STPDSSVSS----EEPNASSNSVSTETSPGSSDETT 616
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.1 bits (57), Expect = 9.4
Identities = 24/96 (25%), Positives = 34/96 (35%)
Frame = +2
Query: 224 AARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVM 403
++ P+G T+P + P SE D+ S PG+S + P
Sbjct: 526 SSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFP-S 584
Query: 404 EXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQT 511
P +S +S E P S S PG S T
Sbjct: 585 STPDSSVSS----EEPNASSNSVSTETSPGSSDETT 616
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 9.4
Identities = 24/96 (25%), Positives = 34/96 (35%)
Frame = +2
Query: 224 AARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVM 403
++ P+G T+P + P SE D+ S PG+S + P
Sbjct: 526 SSTEPSGSSTEPSGSSTEPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFP-S 584
Query: 404 EXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQT 511
P +S +S E P S S PG S T
Sbjct: 585 STPDSSVSS----EEPNASSNSVSTETSPGSSDETT 616
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +2
Query: 368 GPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPVMERPGPSGGQ----TQPPKRAPD 535
GP + V E PG +G P + A P GGQ T P AP
Sbjct: 149 GPSGAPGQDAVGEGPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGGQRSRGTPGPAGAPG 208
Query: 536 *RGPA 550
+GPA
Sbjct: 209 PQGPA 213
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -1
Query: 502 PARPGPLHN--RSAGPAKPGPLHNRSAGPASPGXLHDRGASPATP 374
P PGP N AGP+ PGP AGP P +P P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGP-----AGPPGPAGPAGNDGAPGAP 203
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 27.1 bits (57), Expect = 9.4
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +2
Query: 299 PGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPV 478
PG + LD P + GP +R + PG +G S PGL G
Sbjct: 124 PGLDGLDVPLDPEPAFPCVICPAGPPGTRGPQGEVGRPGQTGES----GHPGLPGRPGK- 178
Query: 479 MERPGPSGGQTQPPKRA-PD*RGP 547
R G +G Q +P ++ P +GP
Sbjct: 179 PGRVGDAGPQGEPGEQGEPGIKGP 202
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -1
Query: 502 PARPGPLHN--RSAGPAKPGPLHNRSAGPASPGXLHDRGASPATP 374
P PGP N AGP+ PGP AGP P +P P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGP-----AGPPGPAGPAGNDGAPGAP 203
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 368 GPGSSRASTPVMEXPGTSGASTPVMERPGLS--GASTPVMERPGPSGGQTQPPKRA 529
G GS E GTSG S+ + PG++ TP M++ GQ P+ A
Sbjct: 164 GVGSRIPKISDREGAGTSGQSSSNVSTPGITPLDNKTPRMQKKSNEIGQASTPECA 219
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 27.1 bits (57), Expect = 9.4
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +2
Query: 299 PGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGASTPVMERPGLSGASTPV 478
PG + LD P + GP +R + PG +G S PGL G
Sbjct: 124 PGLDGLDVPLDPEPAFPCVICPAGPPGTRGPQGEVGRPGQTGES----GHPGLPGRPGK- 178
Query: 479 MERPGPSGGQTQPPKRA-PD*RGP 547
R G +G Q +P ++ P +GP
Sbjct: 179 PGRVGDAGPQGEPGEQGEPGIKGP 202
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 27.1 bits (57), Expect = 9.4
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Frame = +2
Query: 245 EPTDPKRARVLPPKVGKHP-GSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTS 421
+P+ P + P P GS P + PSP+ GP S P E P S
Sbjct: 171 QPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPS-----GPPSPGPVDP-SEDPKPS 224
Query: 422 GASTPVMERPGLSGASTPVMERPGPSGGQTQPPKRAPD*RGPAT 553
+P P S +P + PGP G P +R P GP T
Sbjct: 225 EPPSPGPVDP--SDEPSP-SDPPGPPGPPGPPTRRPPGPPGPPT 265
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -1
Query: 502 PARPGPLHN--RSAGPAKPGPLHNRSAGPASPGXLHDRGASPATP 374
P PGP N AGP+ PGP AGP P +P P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGP-----AGPPGPAGPAGNDGAPGAP 203
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -1
Query: 502 PARPGPLHN--RSAGPAKPGPLHNRSAGPASPGXLHDRGASPATP 374
P PGP N AGP+ PGP AGP P +P P
Sbjct: 164 PGPPGPDGNPGSPAGPSGPGP-----AGPPGPAGPAGNDGAPGAP 203
>AY150815-1|AAN61049.1| 964|Caenorhabditis elegans ADR-1C protein.
Length = 964
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 481 HNRSAGPA---KPGPLHNRSAGPASPGXLHDRGASPA 380
+N+ GP KP N+ GPA+P G SPA
Sbjct: 145 NNQKGGPLNQNKPNWRQNKPKGPAAPKKFDSTGKSPA 181
>AF098986-3|AAC67424.1| 832|Caenorhabditis elegans Hypothetical
protein C36C9.1 protein.
Length = 832
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 520 RWLSLAPARPGPLHNRSAGPAKPGPLHNRSAGPASP 413
RW S A ++P PL +SA P + ++ A P SP
Sbjct: 625 RWSSEATSQPAPLPCKSANPTEDS---SQDAPPTSP 657
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.1 bits (57), Expect = 9.4
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Frame = +2
Query: 227 ARSPTGEPTDPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRAS---TP 397
A +PT T P +P V P + P + PS + + +SR++ TP
Sbjct: 364 ATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVVTAPSTVVTVPTTVMTSRSTVITTP 423
Query: 398 VM-----EXPGTSGASTPVMERPGLSGASTPV 478
GTS AST V + +STP+
Sbjct: 424 TTGGSSPSTAGTSLASTAVTTETSIGSSSTPL 455
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/91 (23%), Positives = 29/91 (31%)
Frame = +2
Query: 254 DPKRARVLPPKVGKHPGSEFWRPDLDASVPSPALYLQCGPGSSRASTPVMEXPGTSGAST 433
DP P + P + +P A P P L S + PV+ G
Sbjct: 258 DPSPVPTAPDVTSESPATP--QPSPPAVTPPPPRLLPAATTESHQTEPVLPRVGALLILV 315
Query: 434 PVMERPGLSGASTPVMERPGPSGGQTQPPKR 526
P R G + T G Q+ P+R
Sbjct: 316 PETARQGSVSSGTSESSNGSVYGNQSLSPQR 346
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 374 GSSRASTPVMEXPGTSGASTPVME---RPGLSGASTPVMERPGPSGGQTQP 517
GS+ + PV S ++ P+ PG S + T V+ G S QT P
Sbjct: 858 GSTVTNPPVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQTNP 908
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,990,469
Number of Sequences: 27780
Number of extensions: 314381
Number of successful extensions: 1264
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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