Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060152.seq
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 354 YIYNVGLGVAGLAPRSWSXPGLAGPALRLWSGPGLAGP 467
           Y+   GLG+ G  P S   P   G  L +W      GP
Sbjct: 197 YLLQQGLGLQGHNPSSGLQP---GEGLPMWKSDTSDGP 231


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 320 VSRTPILGVSRP*EGAPLPS*GPWVLQWATGQQLFNEPRLKC 195
           V R PIL        +P+PS  P  L     + L   PR +C
Sbjct: 429 VERDPILTPPSSNPVSPVPSPDPLDLAIPVRETLILPPRKRC 470


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 67  FTKPINLFEIDLYVRPLE 14
           FT  +NL  +D+Y   +E
Sbjct: 637 FTDKVNLTRVDMYANMIE 654


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 335 SVPSPALYLQCGPGSSRASTPVMEXPGTSG 424
           S PSP   +   P SS +S+P  +    +G
Sbjct: 509 SSPSPNPRIASAPSSSTSSSPPAKGAAAAG 538


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 79  STKNFTKPINLFEIDLYV 26
           STK+   P NLF I+L +
Sbjct: 79  STKSLRTPSNLFVINLAI 96


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 79 STKNFTKPINLFEIDLYV 26
          STK+   P NLF I+L +
Sbjct: 45 STKSLRTPSNLFVINLAI 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,167
Number of Sequences: 438
Number of extensions: 3763
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)