Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060151.seq
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 120 8e-28
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 118 4e-27
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 115 4e-26
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 112 3e-25
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 111 4e-25
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 103 1e-22
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 75 7e-14
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 51 9e-07
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234 31 0.81
11_08_0071 + 28153043-28153555 29 2.5
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 29 3.3
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 28 5.7
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 7.6
02_05_0552 - 29911280-29912541,29912633-29912762 28 7.6
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 120 bits (290), Expect = 8e-28
Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Frame = +2
Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTE--GSXXKQQMAKEYRVKVEKELREICYDVLGL 427
LLSVAYKNV+GA EQK E G+ + + KEYR K+E EL +IC +L L
Sbjct: 269 LLSVAYKNVIGARRASWRIISSIEQKEESRGNEDRCTLIKEYRGKIETELSKICDGILKL 328
Query: 428 LDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAYPDALXFSXAEM 607
LD HL+P ++ PESKVFYL+MKGDYYR L T R E++ AY A + AE+
Sbjct: 329 LDSHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAEL 388
Query: 608 QXTQPLKLGSCVKFS 652
T P++LG + FS
Sbjct: 389 PPTHPIRLGLALNFS 403
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +3
Query: 114 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERN 254
S + +EE V AKLAEQAERY++M M++V +T EL+ EERN
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERN 268
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 118 bits (284), Expect = 4e-27
Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Frame = +2
Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTE--GSXXKQQMAKEYRVKVEKELREICYDVLGL 427
LLSVAYKNV+GA EQK E G+ + + K+YR K+E EL +IC +L L
Sbjct: 51 LLSVAYKNVIGARRASWRIISSIEQKEESRGNEDRVTLIKDYRGKIETELTKICDGILKL 110
Query: 428 LDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAYPDALXFSXAEM 607
L+ HL+P ++ PESKVFYL+MKGDYYR L T R E++ AY A + AE+
Sbjct: 111 LESHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAEL 170
Query: 608 QXTQPLKLGSCVKFS 652
T P++LG + FS
Sbjct: 171 PPTHPIRLGLALNFS 185
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +3
Query: 114 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERN 254
S+ + +EE V AKLAEQAERY++M M++V +T EL+ EERN
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERN 50
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 115 bits (276), Expect = 4e-26
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Frame = +2
Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTEGSXXKQQMA--KEYRVKVEKELREICYDVLGL 427
LLSVAYKNV+GA EQK EG ++ + KEYR K+E EL +IC +L L
Sbjct: 45 LLSVAYKNVIGARRASWRIVSSIEQKEEGRGNEEHVTLIKEYRGKIEAELSKICDGILKL 104
Query: 428 LDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAYPDALXFSXAEM 607
LD HL+P ++ ESKVFYL+MKGDY+R L T R E + AY A + A++
Sbjct: 105 LDSHLVPSSTAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTMVAYKAAQDIALADL 164
Query: 608 QXTQPLKLGSCVKFS 652
T P++LG + FS
Sbjct: 165 APTHPIRLGLALNFS 179
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Frame = +3
Query: 129 VDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERN 254
+ +EE V AKLAEQAERY++M M++V +T EL+ EERN
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEKVAKTVDVEELTVEERN 44
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 112 bits (269), Expect = 3e-25
Identities = 62/150 (41%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Frame = +2
Query: 209 GSDGNRRRT*QRGEELLSVAYKNVVGAXXXXXXXXXXXEQKTEGSXXKQQMA--KEYRVK 382
G+ G T + LLSVAYKNV+GA EQK EG A + YR K
Sbjct: 14 GASGGEELTVEE-RNLLSVAYKNVIGARRASWRIISSIEQKEEGRGNDAHAATIRSYRGK 72
Query: 383 VEKELREICYDVLGLLDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDS 562
+E EL IC +L LLD HL+P A ESKVFYL+MKGDY+R L + R E +
Sbjct: 73 IEAELARICDGILALLDSHLVPSAGAAESKVFYLKMKGDYHRYLAEFKSGDERKQAAEST 132
Query: 563 QKAYPDALXFSXAEMQXTQPLKLGSCVKFS 652
AY A + A++ T P++LG + FS
Sbjct: 133 MNAYKAAQDIALADLAPTHPIRLGLALNFS 162
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 111 bits (268), Expect = 4e-25
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Frame = +2
Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTEGSXXKQQMA--KEYRVKVEKELREICYDVLGL 427
LLSVAYKNV+GA EQK E + +A KEYR ++E EL +IC +L L
Sbjct: 50 LLSVAYKNVIGARRASWRIISSIEQKEESRGNEAYVASIKEYRSRIETELSKICDGILKL 109
Query: 428 LDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAYPDALXFSXAEM 607
LD HL+P A+ ESKVFYL+MKGDY+R L + R E++ AY A + A++
Sbjct: 110 LDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADL 169
Query: 608 QXTQPLKLGSCVKFS 652
T P++LG + FS
Sbjct: 170 PTTHPIRLGLALNFS 184
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETG--VELSNEERN 254
S +EE V AKLAEQAERY++M M++V +T EL+ EERN
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKTTDVGELTVEERN 49
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 103 bits (248), Expect = 1e-22
Identities = 56/135 (41%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Frame = +2
Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTEG--SXXKQQMAKEYRVKVEKELREICYDVLGL 427
LLSVAYKNV+GA EQK EG + A+ YR +VE EL IC +L L
Sbjct: 55 LLSVAYKNVIGARRASWRIVSSIEQKEEGRGAAGHAAAARSYRARVEAELSNICAGILRL 114
Query: 428 LDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAYPDALXFSXAEM 607
LD+ L+P A+ ++KVFYL+MKGDY+R L T R + + AY A + E+
Sbjct: 115 LDERLVPAAAAVDAKVFYLKMKGDYHRYLAEFKTGAERKDAADATLAAYQAAQDIAMKEL 174
Query: 608 QXTQPLKLGSCVKFS 652
T P++LG + FS
Sbjct: 175 SPTHPIRLGLALNFS 189
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Frame = +3
Query: 135 KEELVQRAKLAEQAERYDDMAAAMKEVTET-----GVELSNEERN 254
+EE+V AKLAEQAERY++M M++V G EL+ EERN
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEKVVTAAAAGGGGELTVEERN 54
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 74.5 bits (175), Expect = 7e-14
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Frame = +2
Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTEGSXXKQQMAKEYRVKVEKELREICYDVLGLLD 433
L SV +K +GA EQK Y+ KVE ELR +C +VL ++
Sbjct: 44 LFSVGFKKTIGARRASWRILESLEQKVTAGDQPGVTINGYKKKVEDELRAVCNEVLSIIA 103
Query: 434 KHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAY---PDALXFSXAE 604
H +P A++ E+ VF+ +MKGDYYR L +T + + + S AY P A FS E
Sbjct: 104 IHCLPLANSGENVVFFYKMKGDYYRYLAEFSTGTEKKAATDQSLMAYQAWPCAQLFSLLE 163
Query: 605 M 607
+
Sbjct: 164 I 164
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +3
Query: 132 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNSFQL 266
++E++V+ AKLAEQAERYDDM MK + V++S EER F +
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMKTLARMDVDMSAEERLLFSV 47
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 50.8 bits (116), Expect = 9e-07
Identities = 39/109 (35%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +2
Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQK--TEGSXXKQQMAKEYRVKVEKELREICYDVLGL 427
LLSV YKN++GA E K T+G + EYR KVE E+ +IC DV+ +
Sbjct: 22 LLSVGYKNLIGAKRAAMRIIGSIELKEETKGKESHVRQTAEYRRKVEAEMDKICCDVINI 81
Query: 428 LDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAY 574
+DK KGDYYR L T + V E S AY
Sbjct: 82 IDK------------------KGDYYRYLAEFKTGTEKIEVSELSLNAY 112
>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
Length = 856
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +2
Query: 392 ELREICYDVLGLLDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQK 568
ELRE+ YD+ +DK + +N E ++ + +++Q + T RH++ + ++
Sbjct: 70 ELRELAYDIEDCIDKFMHQLGANGEQHRTSNSIEDFFRKSIQRLKTLGPRHNIAGEIEE 128
>11_08_0071 + 28153043-28153555
Length = 170
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 119 GRWKRTNSLMPLSEGEKCI*TXKFKHNISFSLALNDILV 3
G W R N+ PL + + H++S S++L +ILV
Sbjct: 130 GTWLRANTSCPLCRADTTPSSGDLHHHLSISVSLEEILV 168
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +2
Query: 392 ELREICYDVLGLLDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQK 568
ELRE+ YD+ +DK + +N + +K + ++ + + T +RH++ + ++
Sbjct: 70 ELRELAYDIEDCIDKFMHQLGANDDQHHTSNGVKDFFGKSAKRLKTLGSRHNIAAEIEE 128
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 28.3 bits (60), Expect = 5.7
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Frame = +3
Query: 63 NTFFPFRQGHQ*ISP----LPSSTMSVDKEELVQ---RAKLAEQAERYDDMAAAMKEVT- 218
+T+FPF+QGH IS L M+VD + + +A L ++ K V+
Sbjct: 311 STYFPFKQGHLAISTLRIGLEGIHMTVDGKHVTSFPYKAGLEAWFVTEVGVSGDFKLVSA 370
Query: 219 -ETGVELSNEERNSFQL-LIRMS*VPDG 296
+G+ S + NSF L +++ S +P+G
Sbjct: 371 IASGLPTSEDLENSFDLAMLKSSPIPEG 398
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +2
Query: 371 YRVKVEKELREICYDVLGLLDKH-LIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHS 547
Y + ELR + + G ++ H +I + +PES + L + G RT R
Sbjct: 238 YHIAALVELRAL--GLYGCIEGHGMIDRVLHPESPIRKLAIHGGMGRTFAVAGATRLRSL 295
Query: 548 VVEDSQ---KAYPDALXFSXAEMQXTQPLKL 631
V+ D+Q A A F M T+P ++
Sbjct: 296 VLFDNQVGTVAVDGAARFRNLYMSDTKPSRI 326
>02_05_0552 - 29911280-29912541,29912633-29912762
Length = 463
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 60 SNTFFPFRQGHQ*ISPLPSSTMSVDKEELVQRAKL-AEQAERYDDMAAAM 206
S T H SP+PSS +EEL++R +L AE +R M AA+
Sbjct: 50 SGTTVALNHRHGPCSPVPSSKKRPTEEELLKRDQLRAEHIQRKFAMNAAV 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,882,043
Number of Sequences: 37544
Number of extensions: 280854
Number of successful extensions: 741
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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