Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060151.seq
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   2e-27
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      89   4e-18
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)             66   2e-11
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)                 29   3.4  
SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)              28   5.9  
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     28   5.9  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  119 bits (286), Expect = 2e-27
 Identities = 65/140 (46%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
 Frame = +2

Query: 239 QRGEELLSVAYKNVVGAXXXXXXXXXXXEQKTEGSXXKQQMAKEYRVKVEKELREICYDV 418
           Q    LLSVAYKNVVGA           EQK EGS  K+Q  + YR  +E EL E+C  V
Sbjct: 17  QEERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTETYRQTIENELNEVCETV 76

Query: 419 LGLLDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAYPDALXFSX 598
           L LL+  LIP A + ESKVFYL+MKGDYYR    VA    R  VV+ + KAY +A   + 
Sbjct: 77  LKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREVVQKAMKAYSEAQEIAE 136

Query: 599 AE--MQXTQPLKLGSCVKFS 652
            +  +  T P++LG  + FS
Sbjct: 137 KDPKLPPTDPIRLGLALNFS 156


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
 Frame = +2

Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTEGSXXKQQMAKEYRVKVEKELREICYDVLGLLD 433
           LLSVAYKNVVGA           EQK         + K+YR  +  EL   C +VL +L+
Sbjct: 51  LLSVAYKNVVGARRSSWRVISSMEQKAPEEMAA--LTKKYREDITNELNGKCAEVLDILE 108

Query: 434 KHLIPKAS---NPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAYPDALXFSXAE 604
            +L+       N E+KVFYL+M+GDY+R L  VA   +R   +E S++AY DA      E
Sbjct: 109 NYLLKDGQDDINTEAKVFYLKMRGDYHRYLVEVAEGDSRKENIEKSREAYKDA-SAKAEE 167

Query: 605 MQXTQPLKLGSCVKFS 652
           +  + P++LG  + FS
Sbjct: 168 LSPSHPIRLGLALNFS 183



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 26/48 (54%), Positives = 33/48 (68%)
 Frame = +3

Query: 111 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 254
           P+      +EEL+  AK+AEQAERYDDM  AM  VT+ G  L++EERN
Sbjct: 3   PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERN 50


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 40/87 (45%), Positives = 58/87 (66%)
 Frame = +2

Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTEGSXXKQQMAKEYRVKVEKELREICYDVLGLLD 433
           LLSV+YKN+VG            E+KT  S     + K+Y+  +EKEL+++C +VLG+L+
Sbjct: 124 LLSVSYKNIVGQRRSSWRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILE 182

Query: 434 KHLIPKASNPESKVFYLQMKGDYYRTL 514
           + LIP A + E+KVFY ++KGDYYR L
Sbjct: 183 R-LIPGAEDEENKVFYFKLKGDYYRYL 208



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = +3

Query: 123 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 254
           M V +E L+  AKL+EQ +RYD+MA  MKEV+E   +LS EERN
Sbjct: 80  MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERN 123


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +2

Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTEGSXX---KQQMAKEYRVKVEKELREICYDVLG 424
           LLSVAYKNV+GA           EQK E       K +M + YR  +E+EL+ IC ++L 
Sbjct: 44  LLSVAYKNVIGARRASWRIITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILS 103

Query: 425 LLDKHLIPKASNPESKVFY 481
           LLD  LI  + + ESKVFY
Sbjct: 104 LLDDSLIKNSQSEESKVFY 122



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/41 (70%), Positives = 32/41 (78%)
 Frame = +3

Query: 132 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 254
           DKEE V  AKLAEQAERYDDM  +MKEV + G ELS E+RN
Sbjct: 3   DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRN 43


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/44 (47%), Positives = 27/44 (61%)
 Frame = +3

Query: 123 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERN 254
           M   + ELVQ AKLAEQ ER++D+   MK+  E    L+ E RN
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRN 229



 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 254 LLSVAYKNVVGAXXXXXXXXXXXEQKTEGSXXKQQMAK---EYRVKVEKELREICYDVL 421
           LLSV YKNVVG+           +    G   +    K   +Y+ K+E EL+ +C ++L
Sbjct: 230 LLSVGYKNVVGS-KRFAWRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 99  ISPLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEER 251
           +SPLPS+      +E+V   KLAE+ E  ++++      T+   E + EE+
Sbjct: 643 VSPLPSTATEDQMQEVVDSNKLAEKKEVTEEVSPVKPLSTKESKENALEEK 693


>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 416 VLGLLDKHLIPKASNPESKVFYLQMKGDYYRTLQXVATXXTRHSVVEDSQKAYPDALXFS 595
           +LGL++ H+ PK+ +   ++F      +Y+  L+ V    T+   +E +   Y   + FS
Sbjct: 116 ILGLIESHIDPKSFH--HRMFLAACCLEYFGFLRSVEFTVTQEKCIEQNMPLYAVFIDFS 173

Query: 596 XA 601
            A
Sbjct: 174 KA 175


>SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)
          Length = 436

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 105 PLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNSF 260
           P PS+ +  D EEL+ + +  E  +  D +    K +T    E +N   N +
Sbjct: 213 PEPSTEVIPDSEELLDKEQFTEARDSPDYLTDGSKSITPIPREEANSSDNEY 264


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 350 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 451
           K++M ++Y  K+EKE+    Y+++  L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,204,379
Number of Sequences: 59808
Number of extensions: 311914
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)