Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060150.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    29   0.82 
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   4.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   4.4  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   5.8  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 25  SVLDNLDISTRY-HGACNSAEISEYPVTVLVEPVACDEGL 141
           S L    + TR  H A +S ++S+YP  V++ P    EG+
Sbjct: 396 STLKTSSVKTRRSHSAQSSRKVSDYPNMVVITPADLPEGI 435


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 487 LKRSYKPNPDPWS*RRSQSAGRGERSAGRN 576
           LK  Y+PNP   S   + S G+G  S  RN
Sbjct: 84  LKLDYEPNPFEHSFGSTASVGQGNPSLNRN 113


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 31  LDNLDISTRYHGACNSAEISEYPVTVLVEPVACD 132
           LD+LD   R HG   +  IS Y    L  P+A D
Sbjct: 381 LDSLDDDIRMHGMIMAEVISTYSGVSLSNPLAFD 414


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 432 LLYKRYYSGFLPRLF*NIFNNFYSDFF 352
           +L KR +S F+ RLF + FN+ +S  F
Sbjct: 138 ILSKRLHSIFILRLFNDGFNSLFSSLF 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,829
Number of Sequences: 5004
Number of extensions: 44309
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)