Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060150.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0194 + 13645418-13645790,13645879-13647653                       30   2.0  
03_06_0246 + 32622793-32622804,32622883-32623057,32623395-326236...    29   4.5  

>01_03_0194 + 13645418-13645790,13645879-13647653
          Length = 715

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 458 EFFERSTIRSSRGATSPILTRGVEEGRSLLDGVSGPLVATNSLAHELSQM 607
           EF     + S +  ++ ++ +GV+ G+ L+DG+       N LA   S+M
Sbjct: 620 EFDRMMQLLSEKSKSNEVVCKGVQLGKQLVDGIQNENKGWNMLAEFWSEM 669


>03_06_0246 +
           32622793-32622804,32622883-32623057,32623395-32623659,
           32624594-32624693,32625076-32625125,32625239-32625293,
           32625742-32625774
          Length = 229

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 653 NVWLFF*SFLQLVVGSSARVHGPASWLRPADRSPRPADC 537
           NVWL     L LVV S+ +     +WLRPA+    PA C
Sbjct: 11  NVWLDVPLVLLLVVQSALK-----AWLRPAEFESSPAPC 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,689
Number of Sequences: 37544
Number of extensions: 297435
Number of successful extensions: 900
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)