Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060150.seq
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.88 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +2

Query: 512 LTRGVEEGRSLLDGVSGPLVATNSLAHELSQMSRRPVAESFK 637
           L++ +++   L+D +   L   + L  E +Q++ +  A++FK
Sbjct: 358 LSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFK 399


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 232 AESTTGSKTRPTEKIRRETQ 173
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 264 C*YCPSKFSASQNLPPDRK 208
           C YC   FS  +NL   R+
Sbjct: 122 CEYCSKSFSVKENLSVHRR 140


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = -1

Query: 384 NIFNNFYSDFFSPTYADSLERLYQ 313
           N +NN Y++ ++  Y ++ ++LY+
Sbjct: 95  NNYNNNYNNNYNNNYNNNYKKLYK 118


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = -1

Query: 384 NIFNNFYSDFFSPTYADSLERLYQ 313
           N +NN Y++ ++  Y ++ ++LY+
Sbjct: 95  NNYNNNYNNNYNNNYNNNYKKLYK 118


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 117 FDEDGDRIFGYF 82
           FD++GDRIF  +
Sbjct: 349 FDDNGDRIFAEY 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,614
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)