Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060149.seq
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.67 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 198 SLSRQNCAECSYHGSRVLQDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 353
           SL R+     +   + VL+  Q +A K A  +   N   II+EPT     YG
Sbjct: 332 SLRRKRQKINNSQNALVLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 507 IVQSPHXPSGCRRRWISXRRYHP 439
           I +  H P+G  + WI+  RY P
Sbjct: 789 IQKQSHTPNGIVKTWIAHDRYLP 811


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +3

Query: 246 VLQDSQRQATKDAGTI-SGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDV 422
           V+Q+      K A  + + LN+  I   P+     Y +      + N+L  DL  G  ++
Sbjct: 768 VVQEISSDGLKFAFDVKTTLNISDIALYPSQTTHGYDIYASSIDKENILFLDLSTGKVEM 827


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,344
Number of Sequences: 438
Number of extensions: 3654
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)