Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060147.seq
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 2e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 84 9e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 82 5e-16
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 79 4e-15
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 33 0.22
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.38
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.38
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.0
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_28831| Best HMM Match : GCK (HMM E-Value=3.1) 29 2.7
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 29 3.6
SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08) 29 3.6
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14) 28 6.2
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 6.2
SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_11061| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-19) 28 6.2
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 28 8.3
SB_15368| Best HMM Match : POPLD (HMM E-Value=1.3) 28 8.3
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_13334| Best HMM Match : CRA_rpt (HMM E-Value=5.1) 28 8.3
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE 255
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSE 48
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 84.2 bits (199), Expect = 9e-17
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 433
GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 22 GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAERE 314
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 81.8 bits (193), Expect = 5e-16
Identities = 35/61 (57%), Positives = 46/61 (75%)
Frame = +2
Query: 326 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 505
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 506 T 508
T
Sbjct: 61 T 61
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 508 REHALLAFTLGVKQLIVXVNQ 570
REHA+L +LGV QLIV +N+
Sbjct: 62 REHAILVRSLGVTQLIVAINK 82
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 496
G T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266
Query: 497 NGQTVXXXXXXXXXXXXXXXXE*TKMDXPEPPYSEPDLRKSRGSI-PYIQXIGYXP 661
GQT KMD P ++E + + + P+++ +G+ P
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 196 YKCGGIDKRTIEKFEKEAQE 255
Y G +DKRT+EK+E+EA+E
Sbjct: 166 YLTGQVDKRTLEKYEREAKE 185
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
GI++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 64 GISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 368 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 463
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 207
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 362 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 374 IIDAPGHRDFIKNMITGTSQADCAVLIV 457
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 127 THINIVVIGHVDSGKSTTTGHLIY 198
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_28831| Best HMM Match : GCK (HMM E-Value=3.1)
Length = 320
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = -3
Query: 487 TSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDTXSR 308
T TG ++H+A+ S + EI SIN G+I + ++ E + +
Sbjct: 163 TGSHLDATGCGEDHAALIAEASAEEPEKEIKRENSIN-GSIDSSWSKISEEELKSHSCRD 221
Query: 307 SAFSLSNTQAYLKDPLPIPGPPSRTS 230
+ S +++ P+P P P R+S
Sbjct: 222 TLHSAADSTG---KPVPSPSPSGRSS 244
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 343 PESNIDCDTXSRSAFSLSNTQAYLKDPLPIPGPPSRTSRWYVCQ 212
P+ DCD +R + ++N YL DP G P R WY CQ
Sbjct: 611 PKVKQDCD-GNRHCY-VNNGITYLGDPCV--GSPKRFQMWYSCQ 650
>SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08)
Length = 676
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 325 CDTXSRSAFSLSNTQAYLKDPLPI-PGPPSRTSRWYV 218
C T S + + QA + DP P+ PG + +W++
Sbjct: 135 CQTLSAEVYLVKRCQAKVPDPFPLHPGTSPKNRKWWL 171
>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 172 STTTGHLIYKCGGIDK----RTIEKFEKEAQEWVKDPSNML 282
+T G LIY GG D ++E ++ +A+ W K+ NML
Sbjct: 292 ATVHGGLIYVLGGRDNDADLSSVEVYDPKAKTWSKEELNML 332
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 234
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_59700| Best HMM Match : SCP (HMM E-Value=1.6e-14)
Length = 427
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -3
Query: 388 RSINDGNIVLASFELPESNIDCDTXSRSAFSLSNTQAYLKDPLPIPGPPSR 236
RSI D + + FEL E N R SL N Q+ +P+ P PP+R
Sbjct: 26 RSIEDNSENNSPFELSERNCLKSRKIRKLPSLENLQS-PNNPIGEPSPPAR 75
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 377 IDAPGHRDFIKNMITGTSQADCAVLIVA 460
+D PGH + M+ G + D A+L++A
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIA 96
>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 349 ELPESNIDCDTXSRSAFSLSNTQAYLKDPLPIPGPPSRTSR 227
++PES D D ++ N + P P+P PPS R
Sbjct: 318 QIPESPTDADDNEPDYVNIENFPEGEESPPPVPPPPSLPPR 358
>SB_11061| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-19)
Length = 317
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +3
Query: 462 PVPVNSKLVSLRTVKP*ACLARFHPRCQTAHRXSKPKWIXL 584
P P N L +KP C +HP T S +W+ +
Sbjct: 13 PSPANENGYKLLPIKPRNCRPCYHPHMYTIRYTSSGEWLQM 53
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 286 TQAYLKDPLPIPGPPSRTSRWYVCQYHHIC 197
T Y P +PG S +W +C+Y+ C
Sbjct: 1229 TSLYCSCPTCLPGSGSLEMKWSICKYNGSC 1258
>SB_15368| Best HMM Match : POPLD (HMM E-Value=1.3)
Length = 306
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 154 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQEWVKDPSNMLGYW 291
HV KS TT + I K T+ K KE++ W+ DPS GYW
Sbjct: 118 HVAEDKSFTT-----RVRDIFKETVVTHKSAKESRRWLSDPS--YGYW 158
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 295 N*RLSVSXYHNRYCSLEVRN 354
N +L +S YH+RY SLEV N
Sbjct: 867 NPQLVMSRYHSRYVSLEVEN 886
>SB_13334| Best HMM Match : CRA_rpt (HMM E-Value=5.1)
Length = 398
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 154 HVDSGKSTTTGHLIYKCGGIDKRTI--EKFEKEAQEWVKDPSNMLGYW 291
HV +S TT + I K T+ K KE++ W+ +PSN GYW
Sbjct: 88 HVAEDRSFTT-----RVRDIFKETVVTHKSAKESRRWLSEPSN--GYW 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,098,051
Number of Sequences: 59808
Number of extensions: 380451
Number of successful extensions: 960
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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