Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060147.seq
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 127 8e-30
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 127 8e-30
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 127 8e-30
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 127 8e-30
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 76 3e-14
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 73 2e-13
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 58 7e-09
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 56 3e-08
At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiqu... 36 0.025
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 35 0.059
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 35 0.059
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.18
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.18
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 33 0.18
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 33 0.18
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.24
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.24
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 32 0.31
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 32 0.31
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 32 0.41
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 32 0.41
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 31 0.73
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr... 30 1.3
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 1.7
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.7
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.7
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 2.2
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 2.2
At5g17060.1 68418.m01999 ADP-ribosylation factor, putative simil... 28 5.1
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 28 5.1
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ... 28 6.8
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 6.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 127 bits (306), Expect = 8e-30
Identities = 65/116 (56%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 496
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 497 NGQTVXXXXXXXXXXXXXXXXE*TKMDXPEPPYSEPDLRKSRGSI-PYIQXIGYXP 661
+GQT KMD P YS+ + + Y++ +GY P
Sbjct: 130 DGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNP 185
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/51 (86%), Positives = 45/51 (88%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVK 264
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA E K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAERE 314
M K SFKYAWVLDKLKAERE
Sbjct: 49 MNKRSFKYAWVLDKLKAERE 68
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (306), Expect = 8e-30
Identities = 65/116 (56%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 496
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 497 NGQTVXXXXXXXXXXXXXXXXE*TKMDXPEPPYSEPDLRKSRGSI-PYIQXIGYXP 661
+GQT KMD P YS+ + + Y++ +GY P
Sbjct: 130 DGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNP 185
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/51 (86%), Positives = 45/51 (88%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVK 264
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA E K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAERE 314
M K SFKYAWVLDKLKAERE
Sbjct: 49 MNKRSFKYAWVLDKLKAERE 68
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (306), Expect = 8e-30
Identities = 65/116 (56%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 496
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 497 NGQTVXXXXXXXXXXXXXXXXE*TKMDXPEPPYSEPDLRKSRGSI-PYIQXIGYXP 661
+GQT KMD P YS+ + + Y++ +GY P
Sbjct: 130 DGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNP 185
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/51 (86%), Positives = 45/51 (88%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVK 264
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA E K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAERE 314
M K SFKYAWVLDKLKAERE
Sbjct: 49 MNKRSFKYAWVLDKLKAERE 68
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (306), Expect = 8e-30
Identities = 65/116 (56%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 496
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 497 NGQTVXXXXXXXXXXXXXXXXE*TKMDXPEPPYSEPDLRKSRGSI-PYIQXIGYXP 661
+GQT KMD P YS+ + + Y++ +GY P
Sbjct: 130 DGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNP 185
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/51 (86%), Positives = 45/51 (88%)
Frame = +1
Query: 112 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEWVK 264
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA E K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK 51
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +3
Query: 255 MGKGSFKYAWVLDKLKAERE 314
M K SFKYAWVLDKLKAERE
Sbjct: 49 MNKRSFKYAWVLDKLKAERE 68
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 75.8 bits (178), Expect = 3e-14
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 496
G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G +
Sbjct: 164 GKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYER 223
Query: 497 NGQTVXXXXXXXXXXXXXXXXE*TKMDXPEPPYSEPDLRK-SRGSIPYIQXIGY 655
GQT KMD P +S+ + + +P+++ GY
Sbjct: 224 GGQTREHVQLAKTLGVSKLIVVVNKMDDPTVNWSKERYDEIEQKMVPFLKASGY 277
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = +1
Query: 121 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE 255
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKD 142
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 496
GIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 302 GITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDN 361
Query: 497 -NGQT 508
GQT
Sbjct: 362 LKGQT 366
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/42 (45%), Positives = 32/42 (76%)
Frame = +1
Query: 127 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQ 252
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAK 279
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 258 GKGSFKYAWVLDKLKAERE 314
GKGSF YAW LD+ ERE
Sbjct: 282 GKGSFAYAWALDESAEERE 300
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
GITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+ G
Sbjct: 127 GITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 178
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 109 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 243
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
GITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V+ G
Sbjct: 115 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDG 166
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 118 KEKTHINIVVIGHVDSGKSTTT 183
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3,
ubiquitin ligase; contains similarity to
anaphase-promoting complex subunit 2 GI:6180009 from
[Homo sapiens]
Length = 865
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = -3
Query: 421 CDHVLDEISVSRSINDGNIVLAS---FELPESNIDCDTXSRSAFSLSNTQAYLKDPLPIP 251
C+ +L+++ S+ +N NI AS EL E+ + DT + + S + +PL +P
Sbjct: 595 CEIMLNDLIDSKRVNT-NIKKASQTGAELRENELSVDTLTSTILSTNFWPPIQDEPLELP 653
Query: 250 GPPSRTSRWYVCQYHHI 200
GP + Y +YH I
Sbjct: 654 GPVDKLLSDYANRYHEI 670
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 320 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 320 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 350 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
E S Y + +ID PGH DF + S A+L+V A G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 109 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 219
K EK N +I H+D GKST L+ G I K
Sbjct: 60 KFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 320 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
IT+ + + Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 60 ITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGG 210
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 496
GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITV 177
Query: 497 NGQ 505
+ Q
Sbjct: 178 DRQ 180
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGI 213
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 496
GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITV 177
Query: 497 NGQ 505
+ Q
Sbjct: 178 DRQ 180
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGI 213
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 368 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 124 KTHINIVVIGHVDSGKSTTTGHLIYKCG 207
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 317 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
GITI A K+ + IID PGH DF + D A+ + + G
Sbjct: 146 GITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 197
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 353 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 463
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 353 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 463
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 365 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 463
+V+ +D PGH + M+ G + D A+LI+AA
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 347 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 463
FE SK +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 317 GITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
GITI + + +E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 133 GITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 234
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 566
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 240 EGGPGMGKGSFKYAWVLDKLKAEREXVSQSILLSGSSKLASTMLPS 377
EGGPG S K+ W+ D + +E + +S + + M+P+
Sbjct: 167 EGGPGRCYSSGKHVWLSDAVNSESDYCFRSFMAKSAGIRTIVMVPT 212
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 374 IIDAPGHRDFIKNMITGTSQADCAVLIV 457
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 374 IIDAPGHRDFIKNMITGTSQADCAVLIV 457
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 374 IIDAPGHRDFIKNMITGTSQADCAVLIV 457
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 356 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 457
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 136 NIVVIGHVDSGKSTTTGHLIYKCG 207
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 368 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 457
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At5g17060.1 68418.m01999 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor 1; ARF 1 (GP:385340)
{Drosophila melanogaster)
Length = 192
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 181 TGHLIYKCGGIDKRTIEKFEKEAQEWVKDP 270
T LIY +D+ I K ++E QE +KDP
Sbjct: 85 TDGLIYVVDSLDRERIGKAKQEFQEIIKDP 114
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 460 SYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDTXSRSAFSLSN 287
++D+HS +L+ D + D + ++ N+VL F P+ D T +R A L N
Sbjct: 52 AFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIAR-AIELPN 108
>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 659
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +1
Query: 196 YKCGGIDKRTIEKFEKEAQEWVKDPSNMLGYWTN*RLSVSXYHNRYCSLEVRN*QVLCYH 375
Y C D +K EA E ++ PS+ G+ T LS Y RYC+L R+ + LCYH
Sbjct: 38 YYCKTCDFFVHKKCVDEASESIEHPSHP-GH-TLQLLSKQKY--RYCNLCGRDIKDLCYH 93
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 377 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 472
+D PGH F G D A+++VAA G
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG 588
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,133,571
Number of Sequences: 28952
Number of extensions: 269982
Number of successful extensions: 847
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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